Concepedia

DNA Methylation and SETDB1/H3K9me3 Regulate Predominantly Distinct Sets of Genes, Retroelements, and Chimeric Transcripts in mESCs

Mohammad M. Karimi, Preeti Goyal, Irina A. Maksakova, Misha Bilenky, Danny Leung, Jie Xin Tang, Yoichi Shinkai, Dixie L. Mager, Steven J.M. Jones, Martin Hirst,

Cell stem cell · 2011 · 548 citations · 49 references

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49

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Cole Trapnell, Brian A. Williams, Geo Pertea et al. · Nature Biotechnology · 2010 · 16.5K citations

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

A Mortazavi, Brian A. Williams, Kenneth McCue et al. · Nature Methods · 2008 · 14.3K citations

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Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

Tarjei S. Mikkelsen, Manching Ku, David B. Jaffe et al. · Nature · 2007 · 4.2K citations · Full text

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RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

John C. Marioni, Christopher E. Mason, Shrikant Mane et al. · Genome Research · 2008 · 2.8K citations · Full text

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Mapping short DNA sequencing reads and calling variants using mapping quality scores

Heng Li, Jue Ruan, Richard Durbin · Genome Research · 2008 · 2.7K citations · Full text

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