Science · 2009 · 5.8K citations · 22 references
Life SciencesGeneticsMolecular BiologyChromatin StructureDna RepairEpigeneticsChromatinDna MethylationEpigenetic InheritanceEpigenetic Regulation In DevelopmentEpigenetic Regulation In NeuronsEpigenetic ReprogrammingActive Dna DemethylationDna Methylation DynamicsDna Methylation PatternsHuman Embryonic Stem CellsMethylation PathwaysNeuronal Dna MethylationNeuronal Epigenetic RegulationRepair Of Methylated Dna Bases
Methylation of cytosine bases (5‑methylcytosine) regulates mammalian genomes, is often inherited yet dynamic, indicating active demethylation pathways such as the plant‑like DNA‑repair mechanism that removes 5mC and replaces it with cytosine. The study demonstrates that 5‑hydroxymethylcytosine (5hmC) is abundant in Purkinje neurons and embryonic stem cells, that TET1 converts 5mC to 5hmC both in vitro and in vivo, and that 5hmC levels correlate with TET1 during differentiation. Tahiliani et al.
Methylation Mediation Methylation of cytosine bases, 5-methylcytosine (5mC), in DNA plays an important regulatory role in mammalian genomes. Methylation patterns are often inherited across generations, but they can also be dynamic, suggesting that active DNA demethylation pathways exist. One such pathway, best characterized in plants, involves the removal of the 5mC base, and its replacement by C, via a DNA repair mechanism. Kriaucionis and Heintz (p. 929 , published online 16 April) now show that, as well as 5mC in mammalian genomes, there are also significant amounts of 5-hydroxymethylcytosine (5hmC) in DNA of Purkinje neurons, which have large nuclei with apparently very little heterochromatin. Tahiliani et al. (p. 930, published online 16 April) find that the protein TET1 is capable of converting 5mC into 5hmC both in vitro and in vivo. 5-Hydroxymethylcytosine is also present in embryonic stem cells, and levels of 5hmC and TET1 show correlated variation during cell differentiation.
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Cyclical DNA methylation of a transcriptionally active promoter
Raphaël Métivier, Rozenn Gallais, Christophe Tiffoche et al. · Nature · 2008 · 890 citations
DNA Demethylation in Zebrafish Involves the Coupling of a Deaminase, a Glycosylase, and Gadd45
Kunal Rai, Ian J. Huggins, Smitha R. James et al. · Cell · 2008 · 645 citations · Full text
Transient cyclical methylation of promoter DNA
Sara Kangaspeska, Brenda D. Stride, Raphaël Métivier et al. · Nature · 2008 · 633 citations