Concepedia

Application of asymmetric statistical potentials to antibody–protein docking

Ryan Brenke, David R. Hall, Gwo‐Yu Chuang, Stephen R. Comeau, Tanggis Bohnuud, Dmitri Beglov, Ora Schueler‐Furman, Sándor Vajda, Dima Kozakov

Bioinformatics · 2012 · 205 citations · 23 references

DOIFull text

Open access

Abstract

The method is implemented in the ClusPro protein docking server, available at http://cluspro.bu.edu.

References

23

Estimation of effective interresidue contact energies from protein crystal structures: quasi-chemical approximation

Sanzo Miyazawa, Robert L. Jernigan · Macromolecules · 1985 · 1.6K citations

, , +19

ZDOCK: An initial‐stage protein‐docking algorithm

Rong Chen, Li Li, Zhiping Weng · Proteins Structure Function and Bioinformatics · 2003 · 1.4K citations

Protein–Protein Docking with Simultaneous Optimization of Rigid-body Displacement and Side-chain Conformations

Jeffrey J. Gray, Stewart Moughon, Chu Wang et al. · Journal of Molecular Biology · 2003 · 1.2K citations

, , +9

PIPER: An FFT‐based protein docking program with pairwise potentials

Dima Kozakov, Ryan Brenke, Stephen R. Comeau et al. · Proteins Structure Function and Bioinformatics · 2006 · 868 citations

<i>ClusPro</i>: an automated docking and discrimination method for the prediction of protein complexes

Stephen R. Comeau, David Gatchell, Sándor Vajda et al. · Bioinformatics · 2003 · 861 citations · Full text