Ryan Brenke

PIPER: An FFT‐based protein docking program with pairwise potentials

Dima Kozakov, Ryan Brenke, Stephen R. Comeau et al. · Proteins Structure Function and Bioinformatics · 2006 · 868 citations

Fragment-based identification of druggable ‘hot spots’ of proteins using Fourier domain correlation techniques

Ryan Brenke, Dima Kozakov, Gwo‐Yu Chuang et al. · Bioinformatics · 2009 · 450 citations · Full text

Structural conservation of druggable hot spots in protein–protein interfaces

Dima Kozakov, David R. Hall, Gwo‐Yu Chuang et al. · Proceedings of the National Academy of Sciences · 2011 · 243 citations · Full text

Achieving reliability and high accuracy in automated protein docking: Cluspro, PIPER, SDU, and stability analysis in CAPRI rounds 13–19

Dima Kozakov, David R. Hall, Dmitri Beglov et al. · Proteins Structure Function and Bioinformatics · 2010 · 238 citations · Full text

Application of asymmetric statistical potentials to antibody–protein docking

Ryan Brenke, David R. Hall, Gwo‐Yu Chuang et al. · Bioinformatics · 2012 · 205 citations · Full text