Concepedia

Knowledge-based Docking

Knowledge-Based Docking is a computational docking method that relies on empirically derived interaction preferences or statistical potentials from known protein complex structures to predict the binding modes of macromolecules.

71

Publications

4.8K

Citations

280

Authors

145

Institutions

Publications per year

2017–2026

22

Parents

Publications

71

Surflex-Dock 2.1: Robust performance from ligand energetic modeling, ring flexibility, and knowledge-based search

Ajay N. Jain · Journal of Computer-Aided Molecular Design · 2007 · 586 citations

, , +16

Detailed Analysis of Scoring Functions for Virtual Screening

Martin Ståhl, Matthias Rarey · Journal of Medicinal Chemistry · 2001 · 491 citations

, , +17

<i>DSX</i>: A Knowledge-Based Scoring Function for the Assessment of Protein–Ligand Complexes

Gerd Neudert, G. Klebe · Journal of Chemical Information and Modeling · 2011 · 264 citations

, , +17

Application of asymmetric statistical potentials to antibody–protein docking

Ryan Brenke, David R. Hall, Gwo‐Yu Chuang et al. · Bioinformatics · 2012 · 210 citations · Full text

, , +17

A physical reference state unifies the structure‐derived potential of mean force for protein folding and binding

Song Liu, Chi Zhang, Hongyi Zhou et al. · Proteins Structure Function and Bioinformatics · 2004 · 201 citations

, , +16

1–5 of 71

Authors

280

  1. AM
    Alexandre M. J. J. Bonvin

    Utrecht University, Netherlands

    4 publications · 172 citations

    4

    h-index

  2. SH
    Sheng‐You Huang

    Huazhong University of Science and Technology, China

    4 publications · 182 citations

    4

    h-index

  3. HG
    Holger Gohlke

    Heinrich Heine University Düsseldorf, Germany

    4 publications · 272 citations

    4

    h-index

  4. PC
    Pablo Chacón

    Instituto de Química Física Blas Cabrera, Spain

    3 publications · 216 citations

    3

    h-index

  5. JG
    Jun‐tao Guo

    University of North Carolina at Charlotte, United States

    3 publications · 76 citations

    3

    h-index

1–5 of 280

Institutions

145

  1. Utrecht University

    Utrecht, The Netherlands

    4 h-index

    9 publications

    392 citations

  2. Centre National de la Recherche Scientifique

    Paris, France

    4 h-index

    10 publications

    358 citations

  3. Huazhong University of Science and Technology

    Wuhan, China

    4 h-index

    12 publications

    360 citations

  4. Chinese Academy of Sciences

    Beijing, China

    3 h-index

    26 publications

    950 citations

  5. University of Missouri

    Columbia, United States

    3 h-index

    9 publications

    674 citations

  6. Instituto de Química Física Blas Cabrera

    Madrid, Spain

    3 h-index

    6 publications

    564 citations

  7. Scripps Research Institute

    San Diego, United States

    3 h-index

    8 publications

    665 citations

  8. University of North Carolina at Charlotte

    Charlotte, United States

    3 h-index

    7 publications

    136 citations

1–8 of 145

Venues

  1. Proteins Structure Function and Bioinformatics

    11 publications · 552 citations

    11

    h-index

  2. Journal of Chemical Information and Modeling

    JCIM · 10 publications · 604 citations

    10

    h-index

  3. Bioinformatics

    9 publications · 635 citations

    9

    h-index

  4. Journal of Medicinal Chemistry

    5 publications · 784 citations

    5

    h-index

  5. BMC Bioinformatics

    4 publications · 231 citations

    4

    h-index

1–5