Journal of Bacteriology · 2011 · 132 citations · 49 references
Life SciencesBioinformaticsMicrobiologyGenomicsMicrobial GeneticsProteomicsDna SequencingGenome AlignmentGenome SequencingLactic Acid BacteriaMicrobial ProteomicsSequence AlignmentFunctional ProfilingHuman Health EffectsProkaryotic Sequence AnnotationProtein Function PredictionWhole-genome Resequencing
There is growing interest in the beneficial effects of Lactobacillus plantarum on human health. The genome of L. plantarum WCFS1, first sequenced in 2001, was resequenced using Solexa technology. We identified 116 nucleotide corrections and improved function prediction for nearly 1,200 proteins, with a focus on metabolic functions and cell surface-associated proteins.
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The Pfam Protein Families Database
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The RAST Server: Rapid Annotations using Subsystems Technology
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<tt>BLAT</tt>—The <tt>BLAST</tt>-Like Alignment Tool
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InterProScan: protein domains identifier
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