Concepedia

Targeted RNA sequencing reveals the deep complexity of the human transcriptome

Tim R. Mercer, Daniel J. Gerhardt, Marcel E. Dinger, Joanna Crawford, Cole Trapnell, Jeffrey A. Jeddeloh, John S. Mattick, John L. Rinn

Nature Biotechnology · 2011 · 515 citations · 33 references

DOI

Concepts

References

33

The Sequence Alignment/Map format and SAMtools

Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text

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BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan, Ira M. Hall · Bioinformatics · 2010 · 30.4K citations · Full text

, , +14

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Cole Trapnell, Brian A. Williams, Geo Pertea et al. · Nature Biotechnology · 2010 · 16.5K citations

, , +16

TopHat: discovering splice junctions with RNA-Seq

Cole Trapnell, Lior Pachter, Steven L. Salzberg · Bioinformatics · 2009 · 12.1K citations · Full text

, , +16

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Ewan Birney, Shane Neph, Evelyn J. Cheung et al. · Nature · 2007 · 5.3K citations · Full text

, , +14