Concepedia

Large conserved domains of low DNA methylation maintained by Dnmt3a

Mira Jeong, Deqiang Sun, Min Luo, Yun Huang, Grant A. Challen, Xiaotian Zhang, Lukas Chávez, Hui Wang, Rebecca Hannah, Sang-Bae Kim,

Nature Genetics · 2013 · 326 citations · 45 references

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45

<tt>edgeR</tt> : a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth · Bioinformatics · 2009 · 44.5K citations · Full text

, , +14

Model-based Analysis of ChIP-Seq (MACS)

Yong Zhang, Tao Liu, Clifford A. Meyer et al. · Genome biology · 2008 · 19.9K citations · Full text

, , +11

Cluster analysis and display of genome-wide expression patterns

Michael B. Eisen, Paul T. Spellman, Patrick O. Brown et al. · Proceedings of the National Academy of Sciences · 1998 · 16.4K citations

, , +17

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

Felix Krueger, Simon Andrews · Bioinformatics · 2011 · 5.9K citations · Full text

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A Bivalent Chromatin Structure Marks Key Developmental Genes in Embryonic Stem Cells

B Bernstein, Tarjei S. Mikkelsen, Xiaohui Xie et al. · Cell · 2006 · 5.4K citations · Full text

, , +12