Concepedia

AlienTrimmer: A tool to quickly and accurately trim off multiple short contaminant sequences from high-throughput sequencing reads

Alexis Criscuolo, Sylvain Brisse

Genomics · 2013 · 249 citations · 15 references

DOI

Concepts

References

15

The Sequence Alignment/Map format and SAMtools

Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text

, , +17

Fast and accurate short read alignment with Burrows–Wheeler transform

Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text

, , +12

Cutadapt removes adapter sequences from high-throughput sequencing reads

Marcel Martin · EMBnet journal · 2011 · 35.8K citations · Full text

, , +8

The meaning and use of the area under a receiver operating characteristic (ROC) curve.

J A Hanley, Barbara J. McNeil · Radiology · 1982 · 21.8K citations

, , +12

Base-Calling of Automated Sequencer Traces Using<i>Phred.</i> I. Accuracy Assessment

Brent Ewing, LaDeana Hillier, Michael C. Wendl et al. · Genome Research · 1998 · 7K citations · Full text

, , +16