Concepedia

Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe

Kathryn E. Holt, Stephen Baker, François‐Xavier Weill, Edward C. Holmes, Andrew Kitchen, Jun Yu, Vartul Sangal, Derek Brown, John Coia, Dong Wook Kim,

Nature Genetics · 2012 · 318 citations · 37 references

DOI

Concepts

References

37

The Sequence Alignment/Map format and SAMtools

Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text

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Fast and accurate short read alignment with Burrows–Wheeler transform

Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text

, , +12

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

Alexandros Stamatakis · Bioinformatics · 2006 · 15.9K citations · Full text

, , +17

BEAST: Bayesian evolutionary analysis by sampling trees

Alexei J. Drummond, Andrew Rambaut · BMC Evolutionary Biology · 2007 · 13.1K citations · Full text

, , +16

APE: Analyses of Phylogenetics and Evolution in R language

Emmanuel Paradis, Julien Claude, Korbinian Strimmer · Bioinformatics · 2004 · 12.6K citations · Full text

, , +10