HFSP journal · 2009 · 10 citations · 99 references
Life SciencesBiochemistryMolecular BiologyBiomolecular ModelingComputational BiologySignal TransductionLigand BindingLigand-receptor InteractionsMolecular DockingReceptor BindingReceptor ModelingReceptor-ligand InteractionsComputational Biology ModelsComputational Molecular ModelingG Protein-coupled Receptor ModelingG-protein-coupled ReceptorsLigand-target Binding PredictionLigand-target Interaction ModelingOdorant ReceptorsReceptor-ligand Structural Biology
Binding of small molecules to their targets triggers complex pathways. Computational approaches are keys for predictions of the molecular events involved in such cascades. Here we review current efforts at characterizing the molecular determinants in the largest membrane-bound receptor family, the G-protein-coupled receptors (GPCRs). We focus on odorant receptors, which constitute more than half GPCRs. The work presented in this review uncovers structural and energetic aspects of components of the cellular cascade. Finally, a computational approach in the context of radioactive boron-based antitumoral therapies is briefly described.
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Basic local alignment search tool
Stephen F. Altschul, Warren Gish, Webb Miller et al. · Journal of Molecular Biology · 1990 · 94.5K citations
VMD: Visual molecular dynamics
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Molecular dynamics with coupling to an external bath
Herman J. C. Berendsen, Johan P. M. Postma, Wilfred F. van Gunsteren et al. · The Journal of Chemical Physics · 1984 · 31K citations · Full text
Natural Sciences, Chemistry, Physics +17