<scp>CHARMM</scp>: A program for macromolecular energy, minimization, and dynamics calculations

Bernard R. Brooks, Robert E. Bruccoleri, Barry D. Olafson, +3

Journal of Computational Chemistry

EngineeringMolecular BiologyEmpirical Energy FunctionComputational ChemistryEnergy Minimization +19

The protein data bank: A computer-based archival file for macromolecular structures

F. C. Bernstein, Thomas F. Koetzle, G. J. B. Williams, +6

Journal of Molecular Biology

Structural BioinformaticsBiomolecular Structure PredictionProtein FoldingMedicineNatural Sciences +11

Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons

Anthony Nicholls, Kim A. Sharp, Barry Honig

Proteins Structure Function and Bioinformatics

Raster3D Version 2.0. A program for photorealistic molecular graphics

E.A. Merritt, M.E.P. Murphy

Acta Crystallographica Section D Biological Crystallography

EngineeringComputer Graphic TechniqueMolecular Biology3D ModelingComputational Chemistry +14

SETOR: Hardware-lighted three-dimensional solid model representations of macromolecules

Stephen V. Evans

Journal of Molecular Graphics

Molecular GraphicMacromolecular AssembliesBiophysicsMolecular Design

Functions of a New Photoreceptor Membrane

Dieter Oesterhelt, Walther Stoeckenius

Proceedings of the National Academy of Sciences

Such Electrochemical GradientsPhotobiologyCyanobacteriaPhototropinNew Photoreceptor Membrane +17

RIBBONS 2.0

Mike Carson

Journal of Applied Crystallography

Program Ribbons 2.0EngineeringRibbons 2.0BiofabricationMacromolecular System +7

NAMD: a Parallel, Object-Oriented Molecular Dynamics Program

Mark T. Nelson, William Humphrey, Attila Gürsoy, +4

The International Journal of Supercomputer Applications and High Performance Computing

EngineeringMolecular BiologyComputational ChemistryMolecular DynamicsMolecular Design +15

Three-dimensional Structure of the Tetragonal Crystal Form of Egg-white Avidin in its functional Complex with Biotin at 2·7 Å Resolution

Luisa Pugliese, Alessandro Coda, Massimo Malcovati, +1

Journal of Molecular Biology

Crystal StructureProtein AssemblyBiophysicsTetragonal Crystal FormNatural Sciences +9

Computing smooth molecular surfaces

Amitabh Varshney, Frederick P. Brooks, William V. Wright

IEEE Computer Graphics and Applications

EngineeringComputational ChemistryMolecular GraphicLinear ComplexityMolecular Simulation +18