Journal of Medicinal Chemistry · 2005 · 107 citations · 11 references
Chemoprevention StrategyPharmacotherapyChemical BiologyLead CompoundPharmaceutical ChemistryTumor BiologyDrug ResistanceMolecular PharmacologyMedicinal ChemistryAnti-cancer AgentCdk2/cyclin ARadiation OncologyBiochemistryDrug DevelopmentPharmacology3-Aminopyrazole InhibitorsNatural SciencesRational Drug DesignTumor Growth InhibitionLead Discovery ProcessMedicineDrug DiscoveryLead Optimization
CDK2/cyclin A‑E inhibitors are in clinical trials, and a 3‑aminopyrazole class was previously identified as a promising lead. The study aimed to optimize the lead to enhance solubility and reduce plasma protein binding. Optimization yielded compound 13, a (2S)-N-(5‑cyclopropyl‑1H‑pyrazol‑3‑yl)-2‑[4-(2‑oxo‑1‑pyrrolidinyl)phenyl]propanamide with balanced potency and drug‑like properties, and its mechanism was confirmed in vivo by immunohistochemistry. Compound 13 inhibited CDK2/cyclin A with a K(i) of 31 nM, suppressed tumor‑cell proliferation with sub‑micromolar IC₅₀ values, improved solubility >10‑fold, lowered plasma protein binding to 74 %, and achieved 70 % tumor‑growth inhibition in the A2780 xenograft model, outperforming the earlier lead PNU‑292137.
Inhibitors of cyclin-dependent kinases (CDK) such as CDK2/cyclin A-E are currently undergoing clinical trials to verify their potential as new anticancer agents. In a previous article we described the lead discovery process of a 3-aminopyrazole class of CDK2/cyclin A-E inhibitors. The endpoint of this process was PNU-292137, a compound endowed with in vivo antitumor activity in a mouse tumor xenograft model. We optimized this lead compound to improve some physicochemical properties, notably solubility and plasma protein binding. This lead optimization process brought us to the discovery of (2S)-N-(5-cyclopropyl-1H-pyrazol-3-yl)-2-[4-(2-oxo-1-pyrrolidinyl)phenyl]propanamide (PHA-533533, 13), a compound with a balanced activity vs druglike profile. Compound 13 inhibited CDK2/cyclin A with a K(i) of 31 nM, counteracting tumor cell proliferation of different cell lines with an IC(50) in the submicromolar range. Solubility was improved more than 10 times over the starting lead, while plasma protein binding was decreased from 99% to 74%. With exploitation of this globally enhanced in vitro profile, 13 was more active than PNU-292137 in vivo in the A2780 xenograft model showing a tumor growth inhibition of 70%. Proof of mechanism of action was obtained in vivo by immunohistochemical analysis of tumor slices of 13-treated vs untreated animals.
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Phi/Psi-chology: Ramachandran revisited
Gerard J. Kleywegt, T. Alwyn Jones · Structure · 1996 · 567 citations · Full text