Concepedia

Regional Isolation Drives Bacterial Diversification within Cystic Fibrosis Lungs

Peter Jorth, Benjamin J. Staudinger, Xia Wu, Katherine B. Hisert, Hillary S. Hayden, Jayanthi Garudathri, Christopher L. Harding, Matthew C. Radey, Amir Akhavan Rezayat, Gilbert E. Bautista,

Cell Host & Microbe · 2015 · 332 citations · 41 references

DOIFull text

Open access

Concepts

References

41

Fast and accurate short read alignment with Burrows–Wheeler transform

Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text

, , +12

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

Aaron McKenna, Matthew G. Hanna, Eric Banks et al. · Genome Research · 2010 · 30K citations · Full text

, , +17

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

Pablo Cingolani, Adrian E. Platts, Le Lily Wang et al. · Fly · 2012 · 12.7K citations · Full text

, , +17

HyPhy: hypothesis testing using phylogenies

Sergei L. Kosakovsky Pond, Simon D. W. Frost, Spencer V. Muse · Bioinformatics · 2004 · 3K citations · Full text

, , +16

Genetic adaptation by <i>Pseudomonas aeruginosa</i> to the airways of cystic fibrosis patients

Eric E. Smith, Danielle Buckley, Zaining Wu et al. · Proceedings of the National Academy of Sciences · 2006 · 1.4K citations · Full text

, , +17