Concepedia

Thermodynamic and Kinetic Folding of Riboswitches

Stefan Badelt, Stefan Hammer, Christoph Flamm, Ivo L. Hofacker

Methods in enzymology on CD-ROM/Methods in enzymology · 2015 · 26 citations · 35 references

DOI

Concepts

References

35

Exact stochastic simulation of coupled chemical reactions

Daniel T. Gillespie · The Journal of Physical Chemistry · 1977 · 10.6K citations

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ViennaRNA Package 2.0

Ronny Lorenz, Christian Höner zu Siederdissen, Hakim Tafer et al. · Algorithms for Molecular Biology · 2011 · 5.4K citations · Full text

, , +17

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

David H. Mathews, Jeffrey Sabina, Michael Zuker et al. · Journal of Molecular Biology · 1999 · 3.9K citations · Full text

, , +15

The Vienna RNA Websuite

Andreas Gruber, Ronny Lorenz, Richard Neuböck et al. · Nucleic Acids Research · 2008 · 2.8K citations · Full text

, , +16

Fast folding and comparison of RNA secondary structures

Ivo L. Hofacker, Walter Fontana, Peter F. Stadler et al. · Monatshefte für Chemie - Chemical Monthly · 1994 · 2.3K citations

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