PROTEOMICS · 2015 · 27 citations · 48 references
Life SciencesBiochemistryBiologyCell SignalingProteomicsSignal TransductionCalcium SignalingEgg BiologyEgg ProteinsFertilization BiologyIntracellular Calcium SignalingProtein PhosphorylationEgg ActivationEgg FertilizationPhosphopeptide IdentificationPhosphoproteomicsProtein Phosphorylation AnalysisProtein Phosphorylation CascadesProtein Phosphosite MappingTransformations
Fertilization triggers a dynamic symphony of molecular transformations induced by a rapid rise in intracellular calcium. Most prominent are surface alterations, metabolic activation, cytoskeletal reorganization, and cell-cycle reentry. While the activation process appears to be broadly evolutionarily conserved, and protein phosphorylation is known to play a key role, the signaling networks mediating the response to fertilization are not well described. To address this gap, we performed a time course phosphoproteomic analysis of egg activation in the sea urchin Strongylocentrotus purpuratus, a system that offers biochemical tractability coupled with exquisite synchronicity. By coupling large-scale phosphopeptide enrichment with unbiased quantitative MS, we identified striking changes in global phosphoprotein patterns at 2- and 5-min postfertilization as compared to unfertilized eggs. Overall, we mapped 8796 distinct phosphosite modifications on 2833 phosphoproteins, of which 15% were differentially regulated in early egg activation. Activated kinases were identified by phosphosite mapping, while enrichment analyses revealed conserved signaling cascades not previously associated with egg activation. This work represents the most comprehensive study of signaling associated with egg activation to date, suggesting novel mechanisms that can be experimentally tested and providing a valuable resource for the broader research community. All MS data have been deposited in the ProteomeXchange with identifier PXD002239 (http://proteomecentral.proteomexchange.org/dataset/PXD002239).
48
Enrichment Map: A Network-Based Method for Gene-Set Enrichment Visualization and Interpretation
Daniele Merico, Ruth Isserlin, Oliver Stueker et al. · PLoS ONE · 2010 · 2.4K citations · Full text
Histone Recognition and Large-Scale Structural Analysis of the Human Bromodomain Family
P. Filippakopoulos, S. Picaud, Maria Mangos et al. · Cell · 2012 · 1.8K citations · Full text
clusterMaker: a multi-algorithm clustering plugin for Cytoscape
John H. Morris, Leonard Apeltsin, Aaron M. Newman et al. · BMC Bioinformatics · 2011 · 669 citations · Full text