Integration of biological networks and gene expression data using Cytoscape

Melissa Cline, Michael Smoot, Ethan Cerami, +28

Nature Protocols

Systems BiologyFunctional GenomicsBiological NetworksEngineeringGenetics +11

Enrichment Map: A Network-Based Method for Gene-Set Enrichment Visualization and Interpretation

Daniele Merico, Ruth Isserlin, Oliver Stueker, +2

PLoS ONE

A draft map of the human proteome

Min‐Sik Kim, Sneha M. Pinto, Derese Getnet, +69

Nature

BiologyProteomic TechnologyNatural SciencesMedicineProteasome +4

Pathway enrichment analysis and visualization of omics data using g:Profiler, GSEA, Cytoscape and EnrichmentMap

Jüri Reimand, Ruth Isserlin, Véronique Voisin, +9

Nature Protocols

Omics DataFunctional GenomicsPathway Enrichment AnalysisMedicineGenetics +12

Single-cell transcriptomic profiling of the aging mouse brain

Methodios Ximerakis, Scott Lipnick, Brendan T. Innes, +15

Nature Neuroscience

Single Cell SequencingMedicineSingle-cell GenomicsBiogerontologySingle-cell Analysis +2

Delineation of Two Clinically and Molecularly Distinct Subgroups of Posterior Fossa Ependymoma

Hendrik Witt, Stephen C. Mack, Marina Ryzhova, +31

Cancer Cell

Posterior Fossa EpendymomaSurgical PathologyPathologyMolecularly Distinct SubgroupsMedicine

Too many roads not taken

A.M. Edwards, Ruth Isserlin, Gary D. Bader, +3

Nature

AutoAnnotate: A Cytoscape app for summarizing networks with semantic annotations

Mike Kucera, Ruth Isserlin, Arkady Arkhangorodsky, +1

F1000Research

miR-126 Regulates Distinct Self-Renewal Outcomes in Normal and Malignant Hematopoietic Stem Cells

Eric R. Lechman, Bernhard Gentner, Stanley W.K. Ng, +27

Cancer Cell

The human genome and drug discovery after a decade. Roads (still) not taken

Ruth Isserlin, Gary D. Bader, A.M. Edwards, +3

arXiv (Cornell University)