QPROT: Statistical method for testing differential expression using protein-level intensity data in label-free quantitative proteomics

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

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Monte Carlo sampling methods using Markov chains and their applications

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Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments

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Transcriptomics Technology, Empirical Bayes Methods, Linear Models +21

Global quantification of mammalian gene expression control

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Systems Biology, Protein Expression, Global Quantification +4

Stable Isotope Labeling by Amino Acids in Cell Culture, SILAC, as a Simple and Accurate Approach to Expression Proteomics

Shao‐En Ong, Blagoy Blagoev, Irina Kratchmarova et al. · Molecular & Cellular Proteomics · 2002 · 5.6K citations · Full text