Concepedia

Transcript Annotation

Transcript Annotation is a computational method in RNA sequencing analysis that specifically identifies and characterizes the structural and functional features of transcribed regions within a genome, distinguishing it from other sequence annotation approaches by focusing exclusively on mRNA and non-coding RNA transcripts.

332

Publications

58.5K

Citations

2.5K

Authors

806

Institutions

Publications per year

2017–2026

119

Parents

Publications

332

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Cole Trapnell, Brian A. Williams, Geo Pertea et al. · Nature Biotechnology · 2010 · 16.5K citations

, , +16

GENCODE: The reference human genome annotation for The ENCODE Project

Jennifer Harrow, Adam Frankish, José M. González et al. · Genome Research · 2012 · 5K citations · Full text

, , +17

CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine

Lei Kong, Yong Zhang, Zhiqiang Ye et al. · Nucleic Acids Research · 2007 · 3K citations · Full text

, , +17

GENCODE 2021

Adam Frankish, Mark Diekhans, Irwin Jungreis et al. · Nucleic Acids Research · 2020 · 1.5K citations · Full text

, , +16

BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS

Katharina J. Hoff, Simone Lange, Alexandre Lomsadze et al. · Bioinformatics · 2015 · 1.4K citations · Full text

, , +14

1–5 of 332

Authors

2.5K

  1. RG
    Roderic Guigó

    Universitat Pompeu Fabra, Spain

    10 publications · 8.2K citations

    10

    h-index

  2. AF
    Adam Frankish

    Wellcome Sanger Institute, United Kingdom

    10 publications · 8.5K citations

    10

    h-index

  3. JM
    Jonathan M. Mudge

    European Bioinformatics Institute, United Kingdom

    9 publications · 3.5K citations

    9

    h-index

  4. SF
    Sylvain Foissac

    Génétique Physiologie et Systèmes d'Elevage, France

    7 publications · 766 citations

    7

    h-index

  5. TH
    Tim Hubbard

    Wellcome Sanger Institute, United Kingdom

    6 publications · 8.2K citations

    6

    h-index

1–5 of 2.5K

Institutions

806

  1. Harvard University

    Cambridge, United States

    16 h-index

    56 publications

    13.5K citations

  2. Centre for Genomic Regulation

    Barcelona, Spain

    14 h-index

    45 publications

    23.4K citations

  3. European Bioinformatics Institute

    Cambridge, United Kingdom

    14 h-index

    150 publications

    106K citations

  4. Centre National de la Recherche Scientifique

    Paris, France

    14 h-index

    90 publications

    7.9K citations

  5. National Institutes of Health

    Bethesda, United States

    13 h-index

    120 publications

    45.4K citations

  6. Wellcome Sanger Institute

    Cambridge, United Kingdom

    12 h-index

    91 publications

    137.9K citations

  7. Broad Institute

    Cambridge, United States

    12 h-index

    135 publications

    37.8K citations

  8. Universitat Pompeu Fabra

    Barcelona, Spain

    9 h-index

    17 publications

    4.4K citations

1–8 of 806

Venues

  1. Nucleic Acids Research

    39 publications · 11.1K citations

    32

    h-index

  2. BMC Genomics

    31 publications · 1.9K citations

    23

    h-index

  3. PLoS ONE

    18 publications · 876 citations

    17

    h-index

  4. Genome Research

    GR · 20 publications · 7.4K citations

    17

    h-index

  5. BMC Bioinformatics

    17 publications · 599 citations

    13

    h-index

1–5