Concepedia

Trajectory Inference

Trajectory Inference is a computational method in single-cell genomics that belongs to the broader class of dynamic modeling approaches, distinguished by its purpose of reconstructing continuous, high-dimensional cell state transitions from static single-cell RNA sequencing data to infer developmental or regulatory processes.

454

Publications

42.4K

Citations

3.2K

Authors

1K

Institutions

Publications per year

2017–2026

369

Parents

Children

Publications

454

SCANPY: large-scale single-cell gene expression data analysis

F. Alexander Wolf, Philipp Angerer, Fabian J. Theis · Genome biology · 2018 · 9.3K citations · Full text

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PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells

F. Alexander Wolf, Fiona Hamey, Mireya Plass et al. · Genome biology · 2019 · 1.8K citations · Full text

, , +17

A comparison of single-cell trajectory inference methods

Wouter Saelens, Robrecht Cannoodt, Helena Todorov et al. · Nature Biotechnology · 2019 · 1.7K citations

, , +10

Trajectory-based differential expression analysis for single-cell sequencing data

Koen Van den Berge, Hector Roux de Bézieux, Kelly Street et al. · Nature Communications · 2020 · 856 citations · Full text

, , +17

Analysis of Single-Molecule FRET Trajectories Using Hidden Markov Modeling

Sean McKinney, Chirlmin Joo, Taekjip Ha · Biophysical Journal · 2006 · 794 citations · Full text

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1–5 of 454

Authors

3.2K

  1. FJ
    Fabian J. Theis

    Helmholtz Zentrum München, Germany

    10 publications · 12.4K citations

    10

    h-index

  2. RC
    Robrecht Cannoodt

    VIB-UGent Center for Inflammation Research, Belgium

    9 publications · 3.2K citations

    9

    h-index

  3. WS
    Wouter Saelens

    Ghent University, Belgium

    9 publications · 3.2K citations

    9

    h-index

  4. YS
    Yvan Saeys

    Ghent University, Belgium

    9 publications · 3.2K citations

    9

    h-index

  5. DP
    Dana Pe’er

    Memorial Sloan Kettering Cancer Center, United States

    8 publications · 2K citations

    8

    h-index

1–5 of 3.2K

Institutions

1K

  1. Howard Hughes Medical Institute

    Chevy Chase, United States

    15 h-index

    31 publications

    7.5K citations

  2. Harvard University

    Cambridge, United States

    15 h-index

    72 publications

    7.2K citations

  3. Centre National de la Recherche Scientifique

    Paris, France

    13 h-index

    26 publications

    3.5K citations

  4. Carnegie Mellon University

    Pittsburgh, United States

    12 h-index

    35 publications

    1.6K citations

  5. University of California, Berkeley

    Berkeley, United States

    12 h-index

    35 publications

    6.3K citations

  6. Johns Hopkins University

    Baltimore, United States

    12 h-index

    56 publications

    2.6K citations

  7. Technical University of Munich

    Munich, Germany

    12 h-index

    28 publications

    15.2K citations

  8. Helmholtz Zentrum München

    Munich, Germany

    11 h-index

    53 publications

    43.2K citations

1–8 of 1K

Venues

  1. Nature Communications

    28 publications · 4.4K citations

    27

    h-index

  2. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 40 publications · 1.5K citations

    20

    h-index

  3. Bioinformatics

    21 publications · 954 citations

    18

    h-index

  4. arXiv (Cornell University)

    Repository · 19 publications · 930 citations

    13

    h-index

  5. Genome biology

    10 publications · 11.7K citations

    10

    h-index

1–5