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Differentiation Pathway Inference

Differentiation Pathway Inference is a computational method within trajectory inference that reconstructs the sequential developmental transitions of cells by identifying branching patterns of cell fate commitment from high-dimensional single-cell data.

5

Publications

318

Citations

20

Authors

9

Institutions

Publications per year

2017–2026

2

Parents

Publications

5

Reconstructing gene regulatory dynamics from high-dimensional single-cell snapshot data

Andrea Ocone, Laleh Haghverdi, Nikola S. Mueller et al. · Bioinformatics · 2015 · 169 citations · Full text

, , +14

MiDReG: A method of mining developmentally regulated genes using Boolean implications

Debashis Sahoo, Jun Seita, Deepta Bhattacharya et al. · Proceedings of the National Academy of Sciences · 2010 · 63 citations · Full text

, , +17

Lineage reconstruction from clonal correlations

Caleb Weinreb, Allon M. Klein · Proceedings of the National Academy of Sciences · 2020 · 43 citations · Full text

, , +17

Inferring differentiation pathways from gene expression

Ivan G. Costa, Stefan Roepcke, Christoph Hafemeister et al. · Bioinformatics · 2008 · 24 citations · Full text

, , +16

GraphDDP: a graph-embedding approach to detect differentiation pathways in single-cell-data using prior class knowledge

Fabrizio Costa, Dominic Grün, Rolf Backofen · Nature Communications · 2018 · 19 citations · Full text

, , +17

1–5 of 5

Authors

20

  1. AS
    Alexander Schliep

    Max Planck Institute for Molecular Genetics, Germany

    1 publications · 24 citations

    1

    h-index

  2. RB
    Rolf Backofen

    University of Freiburg, Germany

    1 publications · 19 citations

    1

    h-index

  3. DL
    David L. Dill

    Stanford University, United States

    1 publications · 63 citations

    1

    h-index

  4. FJ
    Fabian J. Theis

    Helmholtz Zentrum München, Germany

    1 publications · 169 citations

    1

    h-index

  5. CH
    Christoph Hafemeister

    New York University, United States

    1 publications · 24 citations

    1

    h-index

1–5 of 20

Institutions

9

  1. Stanford University

    Stanford, United States

    1 h-index

    7 publications

    441 citations

  2. Center for Systems Biology

    Boston, United States

    1 h-index

    2 publications

    86 citations

  3. University of Exeter

    Exeter, United Kingdom

    1 h-index

    1 publications

    19 citations

  4. Harvard University

    Cambridge, United States

    1 h-index

    2 publications

    86 citations

  5. Max Planck Institute of Immunobiology and Epigenetics

    Freiburg, Germany

    1 h-index

    1 publications

    19 citations

  6. University of Freiburg

    Freiburg im Breisgau, Germany

    1 h-index

    2 publications

    38 citations

  7. Max Planck Institute for Molecular Genetics

    Berlin, Germany

    1 h-index

    4 publications

    96 citations

  8. California Institute for Regenerative Medicine

    San Francisco, United States

    1 h-index

    5 publications

    315 citations

1–8 of 9

Venues

  1. Bioinformatics

    2 publications · 193 citations

    2

    h-index

  2. Proceedings of the National Academy of Sciences

    PNAS · 2 publications · 106 citations

    2

    h-index

  3. Nature Communications

    1 publications · 19 citations

    1

    h-index

1–3