Concepedia

Strain-level Variant Analysis

Strain-Level Variant Analysis is a computational approach in metagenomics that identifies and characterizes genetic variants specific to microbial strains within complex communities, distinguishing itself from higher-taxonomic-level analyses by resolving variation at the finest discernible phylogenetic resolution within species.

37

Publications

2.2K

Citations

219

Authors

110

Institutions

Publications per year

2017–2026

15

Parents

Publications

37

<i>Coxiella burnetii</i> Genotyping

Olga O. Glazunova, Véronique Roux, Olga Freylikman et al. · Emerging infectious diseases · 2005 · 252 citations · Full text

, , +17

Persistence of Human Herpesvirus 6 According to Site and Variant: Possible Greater Neurotropism of Variant A

Caroline Breese Hall, Mary T. Caserta, Kenneth C. Schnabel et al. · Clinical Infectious Diseases · 1998 · 224 citations

, , +14

Multi-omics Quantification of Species Variation of Escherichia coli Links Molecular Features with Strain Phenotypes

Jonathan M. Monk, Anna Koza, Miguel A. Campodonico et al. · Cell Systems · 2016 · 159 citations · Full text

, , +17

Detection of B.1.351 SARS-CoV-2 Variant Strain — Zambia, December 2020

Mulenga Mwenda, Ngonda Saasa, Nyambe Sinyange et al. · MMWR Morbidity and Mortality Weekly Report · 2021 · 142 citations · Full text

, , +16

Sigma: Strain-level inference of genomes from metagenomic analysis for biosurveillance

Tae-Hyuk Ahn, Juanjuan Chai, Chongle Pan · Bioinformatics · 2014 · 125 citations · Full text

, , +17

1–5 of 37

Authors

219

  1. OK
    Otridah Kapona

    Zambia National Public Health Institute, Zambia

    1 publications · 142 citations

    1

    h-index

  2. MJ
    Markus J. Herrgård

    Technical University of Denmark, Denmark

    1 publications · 159 citations

    1

    h-index

  3. JP
    Jisun Park

    Jeonbuk National University, South Korea

    1 publications · 13 citations

    1

    h-index

  4. CM
    Claude-Edouard Michel

    Illumina (United Kingdom), United Kingdom

    1 publications · 47 citations

    1

    h-index

  5. ES
    E. Slater

    National Public Health Laboratory, Nepal

    1 publications · 15 citations

    1

    h-index

1–5 of 219

Institutions

110

  1. Levy Economics Institute of Bard College

    New York, United States

    2 h-index

    2 publications

    119 citations

  2. Delft University of Technology

    Delft, The Netherlands

    2 h-index

    6 publications

    357 citations

  3. Broad Institute

    Cambridge, United States

    2 h-index

    16 publications

    952 citations

  4. Washington University in St. Louis

    St Louis, United States

    2 h-index

    4 publications

    238 citations

  5. Harvard University

    Cambridge, United States

    2 h-index

    2 publications

    119 citations

  6. Tufts University

    Medford, United States

    2 h-index

    2 publications

    119 citations

  7. University of California, Berkeley

    Berkeley, United States

    2 h-index

    2 publications

    119 citations

  8. Fraunhofer Chile Research Foundation

    Santiago, Chile

    2 h-index

    3 publications

    219 citations

1–8 of 110

Venues

  1. PLoS ONE

    2 publications · 177 citations

    2

    h-index

  2. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 2 publications · 26 citations

    2

    h-index

  3. Bioinformatics

    2 publications · 137 citations

    2

    h-index

  4. G3 Genes Genomes Genetics

    1 publications · 27 citations

    1

    h-index

  5. Sexually Transmitted Infections

    STI · 1 publications · 47 citations

    1

    h-index

1–5