Concepedia

Strain-level Pan-genomics

Strain-Level Pan-Genomics is a pan-genomic analytical framework that characterizes the complete repertoire of genomic content across individual strains within a species, distinguishing itself by resolving genetic variation at the resolution of single strains to capture strain-specific genes, structural variants, and functional diversity integral to microbial or organismal pangenome architecture.

24

Publications

1.2K

Citations

120

Authors

58

Institutions

Publications per year

2017–2026

15

Parents

Publications

24

A bacterial pan-genome makes gene essentiality strain-dependent and evolvable

Federico Rosconi, Emily Rudmann, Jien Li et al. · Nature Microbiology · 2022 · 135 citations · Full text

, , +17

Large-Scale Genomics Reveals the Genetic Characteristics of Seven Species and Importance of Phylogenetic Distance for Estimating Pan-Genome Size

Sang‐Cheol Park, Kihyun Lee, Yeong Ouk Kim et al. · Frontiers in Microbiology · 2019 · 129 citations · Full text

, , +17

Comprehensive genomic analysis of a plant growth-promoting rhizobacterium Pantoea agglomerans strain P5

Vahid Shariati J., Mohammad Ali Malboobi, Zeinab Tabrizi et al. · Scientific Reports · 2017 · 102 citations · Full text

, , +16

Characterization of probiotic Escherichia coliisolates with a novel pan-genome microarray

Hanni Willenbrock, Peter F. Hallin, Trudy M. Wassenaar et al. · Genome biology · 2007 · 97 citations · Full text

, , +13

Machine learning with random subspace ensembles identifies antimicrobial resistance determinants from pan-genomes of three pathogens

Jason C. Hyun, Erol Kavvas, Jonathan M. Monk et al. · PLoS Computational Biology · 2020 · 90 citations · Full text

, , +17

1–5 of 24

Authors

120

  1. JM
    Jonathan M. Monk

    University of California San Diego, United States

    2 publications · 112 citations

    2

    h-index

  2. BØ
    Bernhard Ø. Palsson

    University of California San Diego, United States

    2 publications · 112 citations

    2

    h-index

  3. VP
    Victor P. J. Gannon

    Public Health Agency of Canada, Canada

    2 publications · 91 citations

    2

    h-index

  4. CL
    Chad Laing

    Public Health Agency of Canada, Canada

    2 publications · 91 citations

    2

    h-index

  5. FG
    Feng Gao

    Tianjin University, China

    2 publications · 69 citations

    2

    h-index

1–5 of 120

Institutions

58

  1. University of California San Diego

    San Diego, United States

    2 h-index

    7 publications

    426 citations

  2. Chinese Academy of Sciences

    Beijing, China

    2 h-index

    3 publications

    122 citations

  3. Tianjin University

    Tianjin, China

    2 h-index

    5 publications

    191 citations

  4. Institute of Microbiology

    Beijing, China

    2 h-index

    13 publications

    286 citations

  5. Public Health Agency of Canada

    Ottawa, Canada

    2 h-index

    8 publications

    297 citations

  6. Kangwon National University

    Chuncheon, South Korea

    1 h-index

    5 publications

    120 citations

  7. Jinan University

    Guangzhou, China

    1 h-index

    1 publications

    22 citations

  8. Fred Hutch Cancer Center

    Seattle, United States

    1 h-index

    2 publications

    270 citations

1–8 of 58

Venues

  1. PLoS ONE

    3 publications · 184 citations

    3

    h-index

  2. BMC Genomics

    3 publications · 141 citations

    3

    h-index

  3. Frontiers in Microbiology

    3 publications · 223 citations

    3

    h-index

  4. Briefings in Bioinformatics

    2 publications · 69 citations

    2

    h-index

  5. OMICS A Journal of Integrative Biology

    1 publications · 13 citations

    1

    h-index

1–5