Concepedia

Strain-level Classification

Strain-Level Classification is a metagenomic annotation method that discriminates microbial taxa at the strain level by identifying fine-scale genetic variations within species using sequencing data.

60

Publications

4.5K

Citations

366

Authors

183

Institutions

Publications per year

2017–2026

28

Parents

Publications

60

Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria

Anton Hördt, Marina García López, Jan P. Meier‐Kolthoff et al. · Frontiers in Microbiology · 2020 · 498 citations · Full text

, , +13

Comprehensive benchmarking and ensemble approaches for metagenomic classifiers

Alexa B. R. McIntyre, Rachid Ounit, Ebrahim Afshinnekoo et al. · Genome biology · 2017 · 383 citations · Full text

, , +16

Necrotizing Cutaneous Mucormycosis after a Tornado in Joplin, Missouri, in 2011

Robyn Neblett Fanfair, Kaitlin Benedict, John Bos et al. · New England Journal of Medicine · 2012 · 362 citations · Full text

, , +16

Patients with Active Tuberculosis often Have Different Strains in the Same Sputum Specimen

Robin M. Warren, Thomas C. Victor, Elizabeth M. Streicher et al. · American Journal of Respiratory and Critical Care Medicine · 2004 · 300 citations

, , +17

ConStrains identifies microbial strains in metagenomic datasets

Chengwei Luo, Rob Knight, Heli Siljander et al. · Nature Biotechnology · 2015 · 290 citations · Full text

, , +14

1–5 of 60

Authors

366

  1. GR
    Gail Rosen

    Drexel University, United States

    3 publications · 537 citations

    3

    h-index

  2. CE
    Christopher E. Mason

    Cornell University, United States

    2 publications · 426 citations

    2

    h-index

  3. TW
    Tanja Woyke

    Joint Genome Institute, United States

    2 publications · 532 citations

    2

    h-index

  4. SL
    Shawn Levy

    HudsonAlpha Institute for Biotechnology, United States

    2 publications · 426 citations

    2

    h-index

  5. PS
    Poorani Subramanian

    Cosmos Corporation (United States), United States

    2 publications · 426 citations

    2

    h-index

1–5 of 366

Institutions

183

  1. Drexel University

    Philadelphia, United States

    3 h-index

    5 publications

    759 citations

  2. Centre National de la Recherche Scientifique

    Paris, France

    3 h-index

    5 publications

    212 citations

  3. New York Medical College

    Valhalla, United States

    2 h-index

    2 publications

    426 citations

  4. Leibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures

    Braunschweig, Germany

    2 h-index

    13 publications

    4.2K citations

  5. Helmholtz Centre for Infection Research

    Braunschweig, Germany

    2 h-index

    2 publications

    93 citations

  6. Oklahoma State University

    Stillwater, United States

    2 h-index

    5 publications

    194 citations

  7. Joint Genome Institute

    Berkeley, United States

    2 h-index

    25 publications

    1.8K citations

  8. Cornell University

    Ithaca, United States

    2 h-index

    16 publications

    3.4K citations

1–8 of 183

Venues

  1. Scientific Reports

    3 publications · 293 citations

    3

    h-index

  2. PLoS ONE

    3 publications · 160 citations

    3

    h-index

  3. Molecular and Biochemical Parasitology

    2 publications · 220 citations

    2

    h-index

  4. 2

    h-index

  5. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 2 publications · 66 citations

    2

    h-index

1–5