Concepedia

Strain Heterogeneity Analysis

Strain Heterogeneity Analysis is a computational method in metagenomics that characterizes the genetic diversity of microbial strains within a community by distinguishing coexisting variants of the same species based on differential patterns of single-nucleotide variants, gene content, or structural variations in recovered genome sequences.

78

Publications

4.7K

Citations

363

Authors

143

Institutions

Publications per year

2017–2026

24

Parents

Publications

78

inStrain profiles population microdiversity from metagenomic data and sensitively detects shared microbial strains

Matthew R. Olm, Alexander Crits‐Christoph, Keith Bouma‐Gregson et al. · Nature Biotechnology · 2021 · 585 citations · Full text

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Benchmarking viromics: an <i>in silico</i> evaluation of metagenome-enabled estimates of viral community composition and diversity

Simon Roux, Joanne Emerson, Emiley A. Eloe‐Fadrosh et al. · PeerJ · 2017 · 337 citations · Full text

, , +16

Strain-resolved analysis of hospital rooms and infants reveals overlap between the human and room microbiome

Brandon Brooks, Matthew R. Olm, Brian Firek et al. · Nature Communications · 2017 · 244 citations · Full text

, , +17

Phase Variable O Antigen Biosynthetic Genes Control Expression of the Major Protective Antigen and Bacteriophage Receptor in Vibrio cholerae O1

Kimberley D. Seed, Shah M. Faruque, John J. Mekalanos et al. · PLoS Pathogens · 2012 · 165 citations · Full text

, , +17

Full‐field strain mapping by optical correlation of micrographs acquired during deformation

João Quinta da Fonseca, Paul Mummery, Philip J. Withers · Journal of Microscopy · 2005 · 162 citations

, , +17

1–5 of 78

Authors

363

  1. JF
    Jillian F. Banfield

    University of California, Berkeley, United States

    4 publications · 1.1K citations

    4

    h-index

  2. BF
    Brian Firek

    University of Pittsburgh, United States

    2 publications · 829 citations

    2

    h-index

  3. GG
    Giorgio Giraffa

    Istituto Sperimentale Italiano Lazzaro Spallanzani, Italy

    2 publications · 73 citations

    2

    h-index

  4. EK
    Enver Kapan

    Boğaziçi University, Türkiye

    2 publications · 55 citations

    2

    h-index

  5. SR
    Simon Roux

    Joint Genome Institute, United States

    2 publications · 364 citations

    2

    h-index

1–5 of 363

Institutions

143

  1. University of California, Berkeley

    Berkeley, United States

    4 h-index

    18 publications

    4.4K citations

  2. Stanford University

    Stanford, United States

    4 h-index

    4 publications

    766 citations

  3. Planetary Science Institute

    Tucson, United States

    4 h-index

    14 publications

    3.2K citations

  4. Lawrence Berkeley National Laboratory

    Berkeley, United States

    3 h-index

    4 publications

    899 citations

  5. Joint Genome Institute

    Berkeley, United States

    3 h-index

    4 publications

    666 citations

  6. University of Manchester

    Manchester, United Kingdom

    2 h-index

    7 publications

    706 citations

  7. University of Pittsburgh

    Pittsburgh, United States

    2 h-index

    4 publications

    1.7K citations

  8. Istituto Superiore di Sanità

    Rome, Italy

    2 h-index

    5 publications

    104 citations

1–8 of 143

Venues

  1. Journal of Applied Microbiology

    3 publications · 81 citations

    3

    h-index

  2. FEMS Microbiology Letters

    3 publications · 92 citations

    3

    h-index

  3. Journal of Medical Microbiology

    JMM · 2 publications · 71 citations

    2

    h-index

  4. Genetics

    2 publications · 72 citations

    2

    h-index

  5. Nature Communications

    2 publications · 396 citations

    2

    h-index

1–5