Simon Roux

CheckV assesses the quality and completeness of metagenome-assembled viral genomes

Stephen Nayfach, Antônio Pedro Camargo, Frederik Schulz et al. · Nature Biotechnology · 2020 · 1.6K citations · Full text

Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study

Dae‐Wook Kang, James B. Adams, Ann Gregory et al. · Microbiome · 2017 · 1.3K citations · Full text

VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses

Jiarong Guo, Benjamin Bolduc, Ahmed A. Zayed et al. · Microbiome · 2021 · 1.2K citations · Full text

VirSorter: mining viral signal from microbial genomic data

Simon Roux, François Enault, Bonnie L. Hurwitz et al. · PeerJ · 2015 · 1.2K citations · Full text

Prophage Prediction, Viral Evolution, Functional Genomics +15

DRAM for distilling microbial metabolism to automate the curation of microbiome function

Michael Shaffer, Mikayla Borton, Bridget B. McGivern et al. · Nucleic Acids Research · 2020 · 1.1K citations · Full text