VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses

Jiarong Guo, Benjamin Bolduc, Ahmed A. Zayed, +8

Microbiome

A genomic catalog of Earth’s microbiomes

Stephen Nayfach, Simon Roux, R. Seshadri, +263

Nature Biotechnology

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

Evan Bolyen, Jai Ram Rideout, Matthew R. Dillon, +105

Qiime 2DysbiosisEngineeringBiological DatabaseData Science +12

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

Evan Bolyen, Jai Ram Rideout, Matthew R. Dillon, +106

Qiime 2DysbiosisEngineeringBiological DatabaseData Science +12

The khmer software package: enabling efficient nucleotide sequence analysis

Michael R. Crusoe, Hussien F. Alameldin, Sherine Awad, +58

F1000Research

GeneticsGenomicsSequence AlignmentKhmer PackagePhylogenetic Analysis +16

Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome

Ahmed A. Zayed, James M. Wainaina, Guillermo Domínguez‐Huerta, +19

Science

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

Evan Bolyen, Jai Ram Rideout, Matthew R. Dillon, +106

Qiime 2DysbiosisEngineeringBiological DatabaseData Science +12

Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses

Bingbing Li, Sarah S. Roley, David S. Duncan, +4

Soil Biology and Biochemistry

BiogeochemistryEngineeringSeasonal ChangeMicrobial EcologyMetagenome Analyses +4

Unraveling the functional dark matter through global metagenomics

Georgios A. Pavlopoulos, Fotis A. Baltoumas, Sirui Liu, +129

Nature

Metagenomic analysis reveals the shared and distinct features of the soil resistome across tundra, temperate prairie, and tropical ecosystems

Xun Qian, Santosh Gunturu, Jiarong Guo, +4

Microbiome