Concepedia

Splice Junction Identification

Splice Junction Identification is the computational process of determining the precise locations in a genomic sequence where introns are excised and exons are joined during RNA splicing, using long-read transcript sequencing data to resolve full-length transcript structures.

170

Publications

93.9K

Citations

928

Authors

337

Institutions

Publications per year

2017–2026

42

Parents

Publications

170

STAR: ultrafast universal RNA-seq aligner

Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text

, , +17

TopHat: discovering splice junctions with RNA-Seq

Cole Trapnell, Lior Pachter, Steven L. Salzberg · Bioinformatics · 2009 · 12.1K citations · Full text

, , +16

A catalogue of splice junction sequences

Stephen M. Mount · Nucleic Acids Research · 1982 · 3.9K citations · Full text

, , +14

Predicting Splicing from Primary Sequence with Deep Learning

Kishore Jaganathan, Sofia Kyriazopoulou Panagiotopoulou, Jeremy F. McRae et al. · Cell · 2019 · 2.9K citations · Full text

, , +14

RNA splice junctions of different classes of eukaryotes: sequence statistics and functional implications in gene expression

Marvin B. Shapiro, Periannan Senapathy · Nucleic Acids Research · 1987 · 2.3K citations · Full text

, , +16

1–5 of 170

Authors

928

  1. JL
    Jinze Liu

    University of Kentucky, United States

    5 publications · 1.4K citations

    5

    h-index

  2. AN
    Abhinav Nellore

    Oregon Health & Science University, United States

    4 publications · 282 citations

    4

    h-index

  3. LC
    Leonardo Collado‐Torres

    Lieber Institute for Brain Development, United States

    4 publications · 220 citations

    4

    h-index

  4. BL
    Ben Langmead

    Johns Hopkins University, United States

    4 publications · 282 citations

    4

    h-index

  5. JN
    James N. MacLeod

    University of Kentucky, United States

    4 publications · 1.4K citations

    4

    h-index

1–5 of 928

Institutions

337

  1. Stanford University

    Stanford, United States

    8 h-index

    25 publications

    9.1K citations

  2. University of California San Diego

    San Diego, United States

    6 h-index

    9 publications

    258 citations

  3. Baylor College of Medicine

    Houston, United States

    6 h-index

    22 publications

    3K citations

  4. National Institutes of Health

    Bethesda, United States

    6 h-index

    11 publications

    3K citations

  5. Johns Hopkins University

    Baltimore, United States

    5 h-index

    34 publications

    2.9K citations

  6. Howard Hughes Medical Institute

    Chevy Chase, United States

    5 h-index

    6 publications

    944 citations

  7. Cold Spring Harbor Laboratory

    Cold Spring Harbor, United States

    4 h-index

    13 publications

    506.4K citations

  8. Lieber Institute for Brain Development

    Baltimore, United States

    4 h-index

    7 publications

    427 citations

1–8 of 337

Venues

  1. Nucleic Acids Research

    22 publications · 9.3K citations

    19

    h-index

  2. Bioinformatics

    19 publications · 69K citations

    16

    h-index

  3. Genome biology

    8 publications · 903 citations

    8

    h-index

  4. BMC Genomics

    7 publications · 299 citations

    7

    h-index

  5. Genome Research

    GR · 5 publications · 1.6K citations

    5

    h-index

1–5