Concepedia

Splice Junction Annotation

Splice Junction Annotation is a computational genomics task that identifies and characterizes the precise boundaries between exons and introns in transcribed RNA sequences by mapping discontinuous alignments of sequencing reads to a reference genome, thereby delineating splice junctions within the transcriptome.

81

Publications

85.6K

Citations

560

Authors

202

Institutions

Publications per year

2017–2026

27

Parents

Publications

81

STAR: ultrafast universal RNA-seq aligner

Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text

, , +17

TopHat: discovering splice junctions with RNA-Seq

Cole Trapnell, Lior Pachter, Steven L. Salzberg · Bioinformatics · 2009 · 12.1K citations · Full text

, , +16

A catalogue of splice junction sequences

Stephen M. Mount · Nucleic Acids Research · 1982 · 3.9K citations · Full text

, , +14

RNA splice junctions of different classes of eukaryotes: sequence statistics and functional implications in gene expression

Marvin B. Shapiro, Periannan Senapathy · Nucleic Acids Research · 1987 · 2.3K citations · Full text

, , +16

Human Gene Mutation Database (HGMD<sup>®</sup>): 2003 update

Peter D. Stenson, Edward V. Ball, Matthew Mort et al. · Human Mutation · 2003 · 1.9K citations

, , +15

1–5 of 81

Authors

560

  1. BL
    Ben Langmead

    Johns Hopkins University, United States

    6 publications · 590 citations

    6

    h-index

  2. AN
    Abhinav Nellore

    Oregon Health & Science University, United States

    6 publications · 590 citations

    6

    h-index

  3. AE
    Andrew E. Jaffe

    Johns Hopkins University, United States

    5 publications · 515 citations

    5

    h-index

  4. CW
    Christopher Wilks

    Johns Hopkins University, United States

    5 publications · 1.5K citations

    5

    h-index

  5. JT
    Jeffrey T. Leek

    Johns Hopkins University, United States

    5 publications · 515 citations

    5

    h-index

1–5 of 560

Institutions

202

  1. Johns Hopkins University

    Baltimore, United States

    6 h-index

    49 publications

    5.3K citations

  2. Lieber Institute for Brain Development

    Baltimore, United States

    5 h-index

    10 publications

    1K citations

  3. Yale University

    New Haven, United States

    4 h-index

    17 publications

    7.9K citations

  4. Stanford University

    Stanford, United States

    4 h-index

    15 publications

    1.4K citations

  5. Johns Hopkins Medicine

    Baltimore, United States

    4 h-index

    11 publications

    1.8K citations

  6. University of California San Diego

    San Diego, United States

    4 h-index

    6 publications

    166 citations

  7. Wellcome Sanger Institute

    Cambridge, United Kingdom

    4 h-index

    9 publications

    1.2K citations

  8. Cornell University

    Ithaca, United States

    4 h-index

    7 publications

    420 citations

1–8 of 202

Venues

  1. Nucleic Acids Research

    16 publications · 8.8K citations

    16

    h-index

  2. Bioinformatics

    9 publications · 68.6K citations

    8

    h-index

  3. Genome biology

    7 publications · 1.1K citations

    7

    h-index

  4. Genome Research

    GR · 6 publications · 710 citations

    6

    h-index

  5. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 5 publications · 88 citations

    5

    h-index

1–5