Concepedia

Splice Graph Construction

Splice Graph Construction is a computational method in transcriptome assembly that represents alternative splicing events by modeling exon-intron structures as nodes and splice junctions as edges within a directed graph, thereby enabling the inference of full-length transcript isoforms from RNA-seq data.

35

Publications

2.3K

Citations

164

Authors

55

Institutions

Publications per year

2017–2026

7

Parents

Publications

35

SpliceSeq: a resource for analysis and visualization of RNA-Seq data on alternative splicing and its functional impacts

Michaël Ryan, James Cleland, RyangGuk Kim et al. · Bioinformatics · 2012 · 248 citations · Full text

, , +17

Prediction and Quantification of Splice Events from RNA-Seq Data

Leonard D. Goldstein, Yi Cao, Grégoire Pau et al. · PLoS ONE · 2016 · 223 citations · Full text

, , +17

Splicing graphs and EST assembly problem

Steffen Heber, Max A. Alekseyev, Sing‐Hoi Sze et al. · Bioinformatics · 2002 · 209 citations

, , +17

DiffSplice: the genome-wide detection of differential splicing events with RNA-seq

Yin Hu, Yan Huang, Ying Du et al. · Nucleic Acids Research · 2012 · 169 citations · Full text

, , +17

SpliceGrapher: detecting patterns of alternative splicing from RNA-Seq data in the context of gene models and EST data

Mark F. Rogers, Julie A. Thomas, Anireddy S. N. Reddy et al. · Genome biology · 2012 · 150 citations · Full text

, , +14

1–5 of 35

Authors

164

  1. PB
    Paola Bonizzoni

    University of Milano-Bicocca, Italy

    3 publications · 71 citations

    3

    h-index

  2. JF
    Jan F. Prins

    University of North Carolina at Chapel Hill, United States

    3 publications · 249 citations

    3

    h-index

  3. JL
    Jinze Liu

    University of Kentucky, United States

    3 publications · 249 citations

    3

    h-index

  4. YH
    Yin Hu

    University of Kentucky, United States

    3 publications · 249 citations

    3

    h-index

  5. LF
    Liliana Florea

    Johns Hopkins University, United States

    3 publications · 173 citations

    3

    h-index

1–5 of 164

Institutions

55

  1. University of Kentucky

    Lexington, United States

    3 h-index

    31 publications

    3.5K citations

  2. University of Milano-Bicocca

    Milan, Italy

    3 h-index

    12 publications

    346 citations

  3. Macquarie University

    Sydney, Australia

    2 h-index

    2 publications

    48 citations

  4. Institute of Biomedical Technologies

    Segrate, Italy

    2 h-index

    2 publications

    60 citations

  5. University of Michigan

    Ann Arbor, United States

    2 h-index

    9 publications

    225 citations

  6. Children's Hospital of Philadelphia

    Philadelphia, United States

    2 h-index

    3 publications

    290 citations

  7. Johns Hopkins University

    Baltimore, United States

    2 h-index

    6 publications

    310 citations

  8. Johns Hopkins Medicine

    Baltimore, United States

    2 h-index

    6 publications

    310 citations

1–8 of 55

Venues

  1. Bioinformatics

    5 publications · 562 citations

    5

    h-index

  2. BMC Bioinformatics

    4 publications · 227 citations

    4

    h-index

  3. Genome Research

    GR · 3 publications · 187 citations

    3

    h-index

  4. Nucleic Acids Research

    3 publications · 274 citations

    3

    h-index

  5. Genome biology

    2 publications · 200 citations

    2

    h-index

1–5