Concepedia

Spatial Transcriptomics Communication Analysis

Spatial Transcriptomics Communication Analysis is a computational framework that integrates spatially resolved gene expression data with cell-cell communication inference methods to map and analyze ligand-receptor interactions within their native tissue architectures.

4

Publications

648

Citations

20

Authors

9

Institutions

Publications per year

2017–2026

4

Parents

Publications

4

Screening cell–cell communication in spatial transcriptomics via collective optimal transport

Zixuan Cang, Yanxiang Zhao, Axel A. Almet et al. · Nature Methods · 2023 · 438 citations · Full text

, , +17

Inferring neuron-neuron communications from single-cell transcriptomics through NeuronChat

Wei Zhao, Kevin G. Johnston, Honglei Ren et al. · Nature Communications · 2023 · 75 citations · Full text

, , +17

spaCI: deciphering spatial cellular communications through adaptive graph model

Ziyang Tang, Tonglin Zhang, Baijian Yang et al. · Briefings in Bioinformatics · 2022 · 74 citations · Full text

, , +17

Identify, quantify and characterize cellular communication from single-cell RNA sequencing data with <i>scSeqComm</i>

Giacomo Baruzzo, Giulia Cesaro, Barbara Di Camillo · Bioinformatics · 2022 · 61 citations · Full text

, , +17

CellNEST reveals cell–cell relay networks using attention mechanisms on spatial transcriptomics

Fatema Tuz Zohora, Deisha Paliwal, Eugenia Flores‐Figueroa et al. · Nature Methods · 2025 · 25 citations · Full text

, , +17

1–5 of 4

Authors

20

  1. QN
    Qing Nie

    University of California, Irvine, United States

    2 publications · 513 citations

    2

    h-index

  2. MV
    Maksim V. Plikus

    University of California, Irvine, United States

    1 publications · 438 citations

    1

    h-index

  3. AR
    Adam R. Stabell

    University of California, Irvine, United States

    1 publications · 438 citations

    1

    h-index

  4. ZT
    Ziyang Tang

    Purdue University West Lafayette, United States

    1 publications · 74 citations

    1

    h-index

  5. YZ
    Yanxiang Zhao

    George Washington University, United States

    1 publications · 438 citations

    1

    h-index

1–5 of 20

Institutions

9

  1. University of California, Irvine

    Irvine, United States

    2 h-index

    11 publications

    3K citations

  2. Irvine University

    Cerritos, United States

    1 h-index

    1 publications

    438 citations

  3. North Carolina State University

    Raleigh, United States

    1 h-index

    1 publications

    438 citations

  4. Wake Forest University

    Winston-Salem, United States

    1 h-index

    1 publications

    74 citations

  5. Indiana University

    Bloomington, United States

    1 h-index

    1 publications

    74 citations

  6. Atrium Health Wake Forest Baptist

    Winston-Salem, United States

    1 h-index

    1 publications

    74 citations

  7. University of Padua

    Padua, Italy

    1 h-index

    3 publications

    183 citations

  8. Indiana University School of Medicine

    Indianapolis, United States

    1 h-index

    1 publications

    74 citations

1–8 of 9

Venues

  1. Nature Methods

    1 publications · 438 citations

    1

    h-index

  2. Nature Communications

    1 publications · 75 citations

    1

    h-index

  3. Bioinformatics

    1 publications · 61 citations

    1

    h-index

  4. Briefings in Bioinformatics

    1 publications · 74 citations

    1

    h-index

  5. Genome Research

    GR · 1 publications · 12 citations

1–5