Concepedia

Spatial Cell State Analysis

Spatial Cell State Analysis is a computational framework that characterizes the functional and phenotypic states of individual cells within their native tissue architectures by integrating spatially resolved molecular profiles with single-cell resolution data to reveal context-dependent cellular heterogeneity.

40

Publications

4K

Citations

281

Authors

127

Institutions

Publications per year

2017–2026

36

Parents

Publications

40

Multimodal Analysis of Composition and Spatial Architecture in Human Squamous Cell Carcinoma

Andrew L. Ji, Adam J. Rubin, Kim Thrane et al. · Cell · 2020 · 1.1K citations · Full text

, , +17

Molecular architecture of the developing mouse brain

Gioele La Manno, Kimberly Siletti, Alessandro Furlan et al. · Nature · 2021 · 597 citations · Full text

, , +16

Integrative spatial analysis reveals a multi-layered organization of glioblastoma

Alissa Greenwald, Noam Galili Darnell, Rouven Hoefflin et al. · Cell · 2024 · 303 citations · Full text

, , +17

Spatially resolved transcriptomics reveals the architecture of the tumor-microenvironment interface

Miranda V. Hunter, Reuben Moncada, Joshua M. Weiss et al. · Nature Communications · 2021 · 285 citations · Full text

, , +17

Reconstruction of cell spatial organization from single-cell RNA sequencing data based on ligand-receptor mediated self-assembly

Xianwen Ren, Guojie Zhong, Qiming Zhang et al. · Cell Research · 2020 · 158 citations · Full text

, , +14

1–5 of 40

Authors

281

  1. FJ
    Fabian J. Theis

    Helmholtz Zentrum München, Germany

    3 publications · 91 citations

    3

    h-index

  2. GP
    Garry P. Nolan

    Stanford University, United States

    3 publications · 1.3K citations

    3

    h-index

  3. CM
    Christopher Mount

    Stanford University, United States

    2 publications · 327 citations

    2

    h-index

  4. MB
    Maria Brbić

    Stanford University, United States

    2 publications · 144 citations

    2

    h-index

  5. MN
    Mats Nilsson

    Science for Life Laboratory, Sweden

    2 publications · 685 citations

    2

    h-index

1–5 of 281

Institutions

127

  1. Science for Life Laboratory

    Stockholm, Sweden

    5 h-index

    17 publications

    7.8K citations

  2. Harvard University

    Cambridge, United States

    4 h-index

    15 publications

    2.1K citations

  3. École Polytechnique Fédérale de Lausanne

    Lausanne, Switzerland

    4 h-index

    8 publications

    2.7K citations

  4. Stanford University

    Stanford, United States

    4 h-index

    31 publications

    17.9K citations

  5. Broad Institute

    Cambridge, United States

    4 h-index

    20 publications

    2.5K citations

  6. Stockholm University

    Stockholm, Sweden

    4 h-index

    12 publications

    2.2K citations

  7. Ludwig-Maximilians-Universität München

    Munich, Germany

    3 h-index

    4 publications

    280 citations

  8. Helmholtz Zentrum München

    Munich, Germany

    3 h-index

    27 publications

    789 citations

1–8 of 127

Venues

  1. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 6 publications · 207 citations

    6

    h-index

  2. Nature Communications

    3 publications · 357 citations

    6

    h-index

  3. Nature Methods

    6 publications · 298 citations

    6

    h-index

  4. Cell Systems

    2 publications · 43 citations

    3

    h-index

  5. Nature Biotechnology

    2 publications · 208 citations

    2

    h-index

1–5