Concepedia

Single-cell Variant Calling

Single-Cell Variant Calling is a computational method in single-cell genomics that identifies somatic or germline genetic variants at the individual cell level by distinguishing true biological mutations from amplification errors and sequencing artifacts inherent to single-cell DNA sequencing data.

62

Publications

5.5K

Citations

440

Authors

176

Institutions

Publications per year

2017–2026

47

Parents

Publications

62

Multiplexed droplet single-cell RNA-sequencing using natural genetic variation

Hyun Min Kang, Meena Subramaniam, Sasha Targ et al. · Nature Biotechnology · 2017 · 1.3K citations · Full text

, , +10

Single molecule molecular inversion probes for targeted, high-accuracy detection of low-frequency variation

Joseph B. Hiatt, Colin C. Pritchard, Stephen J. Salipante et al. · Genome Research · 2013 · 348 citations · Full text

, , +16

Effective detection of variation in single-cell transcriptomes using MATQ-seq

Kuanwei Sheng, Wenjian Cao, Yichi Niu et al. · Nature Methods · 2017 · 271 citations

, , +14

Accurate identification of single-nucleotide variants in whole-genome-amplified single cells

Xiao Dong, Lei Zhang, Brandon Milholland et al. · Nature Methods · 2017 · 261 citations · Full text

, , +16

Multiple Mutation Analyses in Single Tumor Cells with Improved Whole Genome Amplification

Wolfgang Dietmaier, Arndt Hartmann, Sabine Wallinger et al. · American Journal Of Pathology · 1999 · 258 citations · Full text

, , +16

1–5 of 62

Authors

440

  1. DP
    David Posada

    Universidade de Vigo, Spain

    4 publications · 67 citations

    4

    h-index

  2. NE
    Nicholas E. Navin

    The University of Texas MD Anderson Cancer Center, United States

    3 publications · 381 citations

    3

    h-index

  3. YH
    Yuanhua Huang

    University of Hong Kong, Hong Kong SAR China

    3 publications · 278 citations

    3

    h-index

  4. MA
    Michael A. Lodato

    Harvard University, United States

    3 publications · 227 citations

    3

    h-index

  5. CA
    Christopher A. Walsh

    Harvard University, United States

    3 publications · 227 citations

    3

    h-index

1–5 of 440

Institutions

176

  1. Harvard University

    Cambridge, United States

    9 h-index

    53 publications

    4.2K citations

  2. Broad Institute

    Cambridge, United States

    7 h-index

    44 publications

    3K citations

  3. Brigham and Women's Hospital

    Boston, United States

    5 h-index

    10 publications

    804 citations

  4. Dana-Farber Cancer Institute

    Boston, United States

    5 h-index

    22 publications

    1.6K citations

  5. Boston Children's Hospital

    Boston, United States

    5 h-index

    19 publications

    1.7K citations

  6. Galicia Sur Biomedical Foundation

    Vigo, Spain

    4 h-index

    11 publications

    202 citations

  7. Universidade de Vigo

    Vigo, Spain

    4 h-index

    12 publications

    214 citations

  8. Stanford University

    Stanford, United States

    4 h-index

    21 publications

    1.9K citations

1–8 of 176

Venues

  1. Bioinformatics

    4 publications · 280 citations

    5

    h-index

  2. Genome biology

    5 publications · 299 citations

    5

    h-index

  3. Nature Communications

    4 publications · 289 citations

    4

    h-index

  4. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 4 publications · 64 citations

    4

    h-index

  5. Nature Genetics

    4 publications · 411 citations

    4

    h-index

1–5