Concepedia

Single-cell Reference Mapping

Single-Cell Reference Mapping is a computational framework that distinguishes itself by enabling the precise alignment of sparse single-cell epigenomic profiles to a comprehensive reference atlas of cell types through integrative analysis of chromatin accessibility, gene expression, and regulatory context at single-cell resolution.

24

Publications

2.8K

Citations

237

Authors

110

Institutions

Publications per year

2017–2026

23

Parents

Publications

24

Mapping single-cell data to reference atlases by transfer learning

Mohammad Lotfollahi, Mohsen Naghipourfar, Malte D. Luecken et al. · Nature Biotechnology · 2021 · 628 citations · Full text

, , +14

Single-nucleus cross-tissue molecular reference maps toward understanding disease gene function

Gökçen Eraslan, Eugene Drokhlyansky, Shankara Anand et al. · Science · 2022 · 426 citations · Full text

, , +17

Dictionary learning for integrative, multimodal, and scalable single-cell analysis

Yuhan Hao, Tim Stuart, Madeline H. Kowalski et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2022 · 282 citations · Full text

, , +17

Efficient and precise single-cell reference atlas mapping with Symphony

Joyce B. Kang, Aparna Nathan, Kathryn Weinand et al. · Nature Communications · 2021 · 250 citations · Full text

, , +17

Single-cell proteo-genomic reference maps of the hematopoietic system enable the purification and massive profiling of precisely defined cell states

Sergio Triana, Dominik Vonficht, Lea Jopp‐Saile et al. · Nature Immunology · 2021 · 204 citations · Full text

, , +16

1–5 of 24

Authors

237

  1. FJ
    Fabian J. Theis

    Helmholtz Zentrum München, Germany

    4 publications · 770 citations

    4

    h-index

  2. ML
    Mohammad Lotfollahi

    Helmholtz Zentrum München, Germany

    4 publications · 770 citations

    4

    h-index

  3. SR
    Sergei Rybakov

    Helmholtz Zentrum München, Germany

    3 publications · 733 citations

    3

    h-index

  4. AV
    Alexander V. Misharin

    Northwestern University, United States

    3 publications · 733 citations

    3

    h-index

  5. MJ
    Michael James Boyle

    Max Planck Institute for Evolutionary Anthropology, Germany

    2 publications · 145 citations

    2

    h-index

1–5 of 237

Institutions

110

  1. Broad Institute

    Cambridge, United States

    6 h-index

    61 publications

    12.4K citations

  2. Wellcome Sanger Institute

    Cambridge, United Kingdom

    5 h-index

    24 publications

    1.4K citations

  3. Helmholtz Zentrum München

    Munich, Germany

    4 h-index

    24 publications

    5.8K citations

  4. Brigham and Women's Hospital

    Boston, United States

    4 h-index

    21 publications

    3.4K citations

  5. Technical University of Munich

    Munich, Germany

    4 h-index

    14 publications

    2.9K citations

  6. University of California San Diego

    San Diego, United States

    4 h-index

    4 publications

    409 citations

  7. Harvard University

    Cambridge, United States

    4 h-index

    24 publications

    4.1K citations

  8. University of Cambridge

    Cambridge, United Kingdom

    3 h-index

    12 publications

    644 citations

1–8 of 110

Venues

  1. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 7 publications · 401 citations

    7

    h-index

  2. Nature Communications

    4 publications · 541 citations

    4

    h-index

  3. Cell stem cell

    2 publications · 145 citations

    2

    h-index

  4. Nature Immunology

    2 publications · 291 citations

    2

    h-index

  5. Physics Letters A

    1 publications · 54 citations

    1

    h-index

1–5