Comprehensive Integration of Single-Cell Data

Tim Stuart, Andrew Butler, Paul Hoffman, +7

Cell

EngineeringBiomedical Data IntegrationData ScienceSingle Cell SequencingMedicine +9

Integrated analysis of multimodal single-cell data

Yuhan Hao, Stephanie Hao, Erica Andersen‐Nissen, +22

Cell

Dictionary learning for integrative, multimodal and scalable single-cell analysis

Yuhan Hao, Tim Stuart, Madeline H. Kowalski, +8

Nature Biotechnology

EngineeringMachine LearningDeep LearningSingle Cell SequencingMedicine +9

Scalable, multimodal profiling of chromatin accessibility, gene expression and protein levels in single cells

Eleni P. Mimitou, Caleb A. Lareau, Kelvin Y. Chen, +18

Nature Biotechnology

BioinformaticsChromatinChromatin AccessibilityChromatin RemodelingSingle Cell Sequencing +12

Integrated analysis of multimodal single-cell data

Yuhan Hao, Stephanie Hao, Erica Andersen‐Nissen, +22

EngineeringImmunologyMultiomicsImmune SystemTrajectory Analysis +19

Dictionary learning for integrative, multimodal, and scalable single-cell analysis

Yuhan Hao, Tim Stuart, Madeline H. Kowalski, +8

Abstract Mapping Single-cellMachine LearningEngineeringImmunologyMultiomics +25

Characterizing the molecular regulation of inhibitory immune checkpoints with multimodal single-cell screens

Efthymia Papalexi, Eleni P. Mimitou, Andrew Butler, +8

Nature Genetics

Tumor BiologyCancer ImmunosurveillanceMolecular RegulationMedicineMultimodal Single-cell Screens +10

A RORγt+ cell instructs gut microbiota-specific Treg cell differentiation

Ranit Kedmi, Tariq Ahmad Najar, Kailin R. Mesa, +20

Nature

Mucosal ImmunologyImmune Cell DevelopmentImmunologyRorγt+ Cell InstructsGut-organ Axis +5

Periodontal pathogens are a risk factor of oral cavity squamous cell carcinoma, independent of tobacco and alcohol and human papillomavirus

Ian Ganly, Liying Yang, Rachel Giese, +11

International Journal of Cancer

Regeneration of axons in injured spinal cord by activation of bone morphogenetic protein/Smad1 signaling pathway in adult neurons

Pranav J. Parikh, Yuhan Hao, Mohsen Hosseinkhani, +4

Proceedings of the National Academy of Sciences

Bone Morphogenetic Protein/smad1Peripheral Nerve InjuryAav TreatmentPeripheral NervePeripheral Nerves +15