Concepedia

Single-cell Batch Correction

Single-Cell Batch Correction is a computational method designed to identify and remove technical variations across different experimental batches in single-cell epigenomic datasets while preserving biological heterogeneity of interest.

40

Publications

4.9K

Citations

189

Authors

88

Institutions

Publications per year

2017–2026

39

Parents

Publications

40

Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors

Laleh Haghverdi, Aaron T. L. Lun, Michael D. Morgan et al. · Nature Biotechnology · 2018 · 2.7K citations · Full text

, , +14

A test metric for assessing single-cell RNA-seq batch correction

Maren Büttner, Zhichao Miao, F. Alexander Wolf et al. · Nature Methods · 2018 · 539 citations · Full text

, , +12

A practical solution to pseudoreplication bias in single-cell studies

Kip D. Zimmerman, Mark A. Espeland, Carl D. Langefeld · Nature Communications · 2021 · 315 citations · Full text

, , +14

BERMUDA: a novel deep transfer learning method for single-cell RNA sequencing batch correction reveals hidden high-resolution cellular subtypes

Tongxin Wang, Travis S. Johnson, Wei Shao et al. · Genome biology · 2019 · 150 citations · Full text

, , +16

Flexible comparison of batch correction methods for single-cell RNA-seq using BatchBench

Ruben Chazarra-Gil, Stijn van Dongen, Vladimir Yu Kiselev et al. · Nucleic Acids Research · 2021 · 100 citations · Full text

, , +15

1–5 of 40

Authors

189

  1. JC
    John C. Marioni

    European Bioinformatics Institute, United Kingdom

    2 publications · 2.7K citations

    2

    h-index

  2. RC
    Ruben Chazarra-Gil

    Wellcome Sanger Institute, United Kingdom

    2 publications · 113 citations

    2

    h-index

  3. MD
    Michael D. Morgan

    University of Cambridge, United Kingdom

    2 publications · 2.7K citations

    2

    h-index

  4. JZ
    Jie Zhang

    Indiana University – Purdue University Indianapolis, United States

    2 publications · 165 citations

    2

    h-index

  5. TS
    Travis S. Johnson

    Indiana University – Purdue University Indianapolis, United States

    2 publications · 165 citations

    2

    h-index

1–5 of 189

Institutions

88

  1. Wellcome Sanger Institute

    Cambridge, United Kingdom

    5 h-index

    14 publications

    7K citations

  2. Helmholtz Zentrum München

    Munich, Germany

    3 h-index

    5 publications

    4.4K citations

  3. University of North Carolina at Chapel Hill

    Chapel Hill, United States

    3 h-index

    15 publications

    342 citations

  4. European Bioinformatics Institute

    Cambridge, United Kingdom

    3 h-index

    6 publications

    6.6K citations

  5. University of Cambridge

    Cambridge, United Kingdom

    3 h-index

    5 publications

    6K citations

  6. University of Lausanne

    Lausanne, Switzerland

    2 h-index

    7 publications

    473 citations

  7. Southern Medical University

    Guangzhou, China

    2 h-index

    2 publications

    165 citations

  8. de Duve Institute

    Brussels, Belgium

    2 h-index

    4 publications

    126 citations

1–8 of 88

Venues

  1. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 10 publications · 176 citations

    10

    h-index

  2. Nature Communications

    5 publications · 510 citations

    5

    h-index

  3. Bioinformatics

    5 publications · 159 citations

    5

    h-index

  4. Briefings in Bioinformatics

    3 publications · 66 citations

    3

    h-index

  5. Genome biology

    1 publications · 150 citations

    1

    h-index

1–5