Concepedia

Single-cell Assembly

Single-Cell Assembly is a computational method in sequence assembly that reconstructs complete genomes or transcriptomes from the fragmented sequencing data derived from individual cells, distinguishing itself by addressing amplification biases, sparse coverage, and high error rates inherent in single-cell sequencing technologies.

31

Publications

31K

Citations

168

Authors

73

Institutions

Publications per year

2017–2026

12

Parents

Publications

31

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Anton Bankevich, Sergey Nurk, Dmitry Antipov et al. · Journal of Computational Biology · 2012 · 27.2K citations

, , +17

Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products

Sergey Nurk, Anton Bankevich, Dmitry Antipov et al. · Journal of Computational Biology · 2013 · 1.4K citations · Full text

, , +17

Silver, gold and bimetallic nanoparticles production using single-cell protein (Spirulina platensis) Geitler

K. Govindaraju, Sabjan Khaleel Basha, V. Ganesh Kumar et al. · Journal of Materials Science · 2008 · 382 citations

, , +16

Programmable single-cell mammalian biocomputers

Simon Ausländer, David M. Auslander, Marius Müller et al. · Nature · 2012 · 377 citations · Full text

, , +9

Efficient de novo assembly of single-cell bacterial genomes from short-read data sets

Hamidreza Chitsaz, Joyclyn Yee-Greenbaum, Glenn Tesler et al. · Nature Biotechnology · 2011 · 235 citations

, , +14

1–5 of 31

Authors

168

  1. PA
    Pavel A. Pevzner

    University of California San Diego, United States

    5 publications · 29K citations

    5

    h-index

  2. HC
    Hamidreza Chitsaz

    Colorado State University, United States

    3 publications · 333 citations

    3

    h-index

  3. AD
    Andrey D. Prjibelski

    St Petersburg University, Russia

    3 publications · 28.7K citations

    3

    h-index

  4. GT
    Glenn Tesler

    University of California San Diego, United States

    3 publications · 28.8K citations

    3

    h-index

  5. SN
    Sergey Nurk

    National Human Genome Research Institute, United States

    3 publications · 28.7K citations

    3

    h-index

1–5 of 168

Institutions

73

  1. University of California San Diego

    San Diego, United States

    4 h-index

    12 publications

    85.3K citations

  2. Canada's Michael Smith Genome Sciences Centre

    Vancouver, Canada

    3 h-index

    15 publications

    812 citations

  3. McGill University

    Montreal, Canada

    3 h-index

    5 publications

    369 citations

  4. University of British Columbia

    Vancouver, Canada

    3 h-index

    6 publications

    179 citations

  5. Massachusetts Institute of Technology

    Cambridge, United States

    3 h-index

    12 publications

    741 citations

  6. IIT@MIT

    Cambridge, United States

    3 h-index

    6 publications

    324 citations

  7. Harvard University

    Cambridge, United States

    2 h-index

    2 publications

    139 citations

  8. University of South Carolina

    Columbia, United States

    2 h-index

    2 publications

    28.6K citations

1–8 of 73

Venues

  1. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 3 publications · 55 citations

    3

    h-index

  2. Bioinformatics

    3 publications · 331 citations

    3

    h-index

  3. Nucleic Acids Research

    2 publications · 63 citations

    2

    h-index

  4. Network Computation in Neural Systems

    2 publications · 67 citations

    2

    h-index

  5. Journal of Computational Biology

    2 publications · 28.6K citations

    2

    h-index

1–5