Concepedia

Side-chain Refinement

Side-Chain Refinement is a structural refinement technique in computational protein modeling that specifically optimizes the conformation of amino acid side chains to improve the accuracy of a three-dimensional protein structure prediction while keeping the backbone coordinates fixed.

59

Publications

7.4K

Citations

180

Authors

88

Institutions

Publications per year

2017–2026

9

Parents

Publications

59

Iterative model building, structure refinement and density modification with the<i>PHENIX AutoBuild</i>wizard

Thomas C. Terwilliger, Ralf W. Grosse‐Kunstleve, Pavel V. Afonine et al. · Acta Crystallographica Section D Biological Crystallography · 2007 · 1.5K citations · Full text

, , +11

GalaxyRefine: protein structure refinement driven by side-chain repacking

Lim Heo, Hahnbeom Park, Chaok Seok · Nucleic Acids Research · 2013 · 1.4K citations · Full text

, , +15

Automated main-chain model building by template matching and iterative fragment extension

Thomas C. Terwilliger · Acta Crystallographica Section D Biological Crystallography · 2002 · 582 citations · Full text

, , +15

<i>ARP</i>/<i>wARP</i> and molecular replacement

Anastassis Perrakis, Maria Harkiolaki, Keith S. Wilson et al. · Acta Crystallographica Section D Biological Crystallography · 2001 · 457 citations · Full text

, , +13

Use of pair potentials across protein interfaces in screening predicted docked complexes

Gidon Moont, Henry A. Gabb, Michael J.E. Sternberg · Proteins Structure Function and Bioinformatics · 1999 · 258 citations

, , +17

1–5 of 59

Authors

180

  1. JM
    Jianpeng Ma

    Baylor College of Medicine, United States

    3 publications · 115 citations

    3

    h-index

  2. MJ
    Michael J.E. Sternberg

    Imperial College London, United Kingdom

    3 publications · 289 citations

    3

    h-index

  3. TC
    Thomas C. Terwilliger

    Los Alamos National Laboratory, United States

    3 publications · 2.2K citations

    3

    h-index

  4. NW
    Nigel W. Moriarty

    Lawrence Berkeley National Laboratory, United States

    2 publications · 1.5K citations

    2

    h-index

  5. HA
    Henry A. Gabb

    The Honourable Society of Lincoln's Inn, United Kingdom

    2 publications · 272 citations

    2

    h-index

1–5 of 180

Institutions

88

  1. University of California, Davis

    Davis, United States

    3 h-index

    2 publications

    51 citations

  2. Los Alamos National Laboratory

    Los Alamos, United States

    3 h-index

    4 publications

    3.7K citations

  3. University of Washington

    Seattle, United States

    3 h-index

    5 publications

    424 citations

  4. Baylor College of Medicine

    Houston, United States

    3 h-index

    6 publications

    230 citations

  5. Zero to Three

    Washington, United States

    3 h-index

    6 publications

    402 citations

  6. University College London

    London, United Kingdom

    2 h-index

    8 publications

    554 citations

  7. Rice University

    Houston, United States

    2 h-index

    3 publications

    155 citations

  8. Lawrence Berkeley National Laboratory

    Berkeley, United States

    2 h-index

    7 publications

    7.6K citations

1–8 of 88

Venues

  1. Proteins Structure Function and Bioinformatics

    11 publications · 1K citations

    12

    h-index

  2. 9

    h-index

  3. Protein Engineering Design and Selection

    PEDS · 3 publications · 45 citations

    3

    h-index

  4. 2

    h-index

  5. Journal of Chemical Theory and Computation

    JCTC · 2 publications · 58 citations

    2

    h-index

1–5