Concepedia

Sequence Ambiguity Resolution

Sequence Ambiguity Resolution is a computational method within de novo peptide sequencing that resolves indeterminacies in amino acid sequence assignment by leveraging mass spectrometry data patterns, sequence homology, or contextual fragmentation evidence to distinguish between structurally similar or isobaric candidates.

65

Publications

4K

Citations

320

Authors

147

Institutions

Publications per year

2017–2026

14

Parents

Publications

65

Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information

Stefan Janssen, Daniel McDonald, Antonio González et al. · mSystems · 2018 · 591 citations · Full text

, , +17

DECIPHER: harnessing local sequence context to improve protein multiple sequence alignment

Erik S. Wright · BMC Bioinformatics · 2015 · 422 citations · Full text

, , +14

SPIDER: SOFTWARE FOR PROTEIN IDENTIFICATION FROM SEQUENCE TAGS WITH <i>DE NOVO</i> SEQUENCING ERROR

Yonghua Han, Bin Ma, Kaizhong Zhang · Journal of Bioinformatics and Computational Biology · 2005 · 219 citations

, , +17

Complete De Novo Assembly of Monoclonal Antibody Sequences

Ngoc Hieu Tran, M. Ziaur Rahman, Lin He et al. · Scientific Reports · 2016 · 172 citations · Full text

, , +17

High-Throughput Identification of Proteins and Unanticipated Sequence Modifications Using a Mass-Based Alignment Algorithm for MS/MS de Novo Sequencing Results

Brian C. Searle, Surendra Dasari, Mark S. Turner et al. · Analytical Chemistry · 2004 · 144 citations

, , +14

1–5 of 65

Authors

320

  1. AF
    Ari Frank

    University of California San Diego, United States

    2 publications · 113 citations

    2

    h-index

  2. YH
    Yonghua Han

    Jiangsu Normal University, China

    2 publications · 254 citations

    2

    h-index

  3. BM
    Bin Ma

    University of Waterloo, Canada

    2 publications · 254 citations

    2

    h-index

  4. KZ
    Kaizhong Zhang

    Western University, Canada

    2 publications · 254 citations

    2

    h-index

  5. LX
    Lei Xin

    Bioinformatics Solutions (Canada), Canada

    2 publications · 209 citations

    2

    h-index

1–5 of 320

Institutions

147

  1. National Institutes of Health

    Bethesda, United States

    4 h-index

    9 publications

    405 citations

  2. Centre National de la Recherche Scientifique

    Paris, France

    4 h-index

    14 publications

    488 citations

  3. Karolinska Institutet

    Stockholm, Sweden

    3 h-index

    6 publications

    228 citations

  4. Massachusetts Institute of Technology

    Cambridge, United States

    3 h-index

    10 publications

    678 citations

  5. University of California San Diego

    San Diego, United States

    3 h-index

    17 publications

    5.7K citations

  6. Bioinformatics Solutions (Canada)

    Waterloo, Canada

    2 h-index

    5 publications

    725 citations

  7. National Institute of Allergy and Infectious Diseases

    Bethesda, United States

    2 h-index

    4 publications

    232 citations

  8. Karolinska University Hospital

    Stockholm, Sweden

    2 h-index

    2 publications

    98 citations

1–8 of 147

Venues

  1. Journal of the American Society for Mass Spectrometry

    JASMS · 5 publications · 167 citations

    5

    h-index

  2. Nucleic Acids Research

    5 publications · 312 citations

    5

    h-index

  3. Analytical Chemistry

    4 publications · 290 citations

    4

    h-index

  4. Journal of Proteome Research

    JPR · 4 publications · 152 citations

    4

    h-index

  5. Journal of Mass Spectrometry

    JMS · 2 publications · 31 citations

    2

    h-index

1–5