Bioinformatics Solutions (Canada)

PEAKS: powerful software for peptide <i>de novo</i> sequencing by tandem mass spectrometry

Bin Ma, Kaizhong Zhang, Christopher Hendrie et al. · Rapid Communications in Mass Spectrometry · 2003 · 1.4K citations

PEAKS DB: De Novo Sequencing Assisted Database Search for Sensitive and Accurate Peptide Identification

Jing Zhang, Lei Xin, Baozhen Shan et al. · Molecular & Cellular Proteomics · 2011 · 1.1K citations · Full text

De novo peptide sequencing by deep learning

Ngoc Hieu Tran, Xianglilan Zhang, Lei Xin et al. · Proceedings of the National Academy of Sciences · 2017 · 444 citations · Full text

Convolutional Neural Network, Engineering, Machine Learning +19

Deep learning enables de novo peptide sequencing from data-independent-acquisition mass spectrometry

Ngoc Hieu Tran, Rui Qiao, Lei Xin et al. · Nature Methods · 2018 · 361 citations

Systems Biology, Medicine, Mass Spectrometry +9

PATTERNHUNTER II: HIGHLY SENSITIVE AND FAST HOMOLOGY SEARCH

Derek Kisman, John Tromp · Journal of Bioinformatics and Computational Biology · 2004 · 224 citations