Concepedia

Semi-supervised Binning

Semi-Supervised Binning is a metagenomic binning approach that belongs to the class of computational methods utilizing both labeled reference genomes and unlabeled sequence data to refine taxonomic or functional genome aggregations, distinguishing itself from unsupervised and fully supervised techniques by integrating partial prior knowledge into the clustering process.

5

Publications

606

Citations

19

Authors

10

Institutions

Publications per year

2017–2026

3

Parents

Publications

5

SemiBin2: self-supervised contrastive learning leads to better MAGs for short- and long-read sequencing

Shaojun Pan, Xing‐Ming Zhao, Luís Pedro Coelho · Bioinformatics · 2023 · 188 citations · Full text

, , +17

A deep siamese neural network improves metagenome-assembled genomes in microbiome datasets across different environments

Shaojun Pan, Chengkai Zhu, Xing‐Ming Zhao et al. · Nature Communications · 2022 · 187 citations · Full text

, , +17

SolidBin: improving metagenome binning with semi-supervised normalized cut

Ziye Wang, Zhengyang Wang, Yang Young Lu et al. · Bioinformatics · 2019 · 89 citations · Full text

, , +13

Binning sequences using very sparse labels within a metagenome

Chon‐Kit Kenneth Chan, Arthur Hsu, Saman Halgamuge et al. · BMC Bioinformatics · 2008 · 88 citations · Full text

, , +13

Unsupervised binning of environmental genomic fragments based on an error robust selection of l-mers

Bin Yang, Yu Peng, Henry Chi-Ming Leung et al. · BMC Bioinformatics · 2010 · 54 citations · Full text

, , +17

1–5 of 5

Authors

19

  1. XZ
    Xing‐Ming Zhao

    Fudan University, China

    2 publications · 375 citations

    2

    h-index

  2. LP
    Luís Pedro Coelho

    European Molecular Biology Laboratory, Germany

    2 publications · 375 citations

    2

    h-index

  3. SP
    Shaojun Pan

    Shanghai Jiao Tong University, China

    2 publications · 375 citations

    2

    h-index

  4. CK
    Chon‐Kit Kenneth Chan

    The University of Western Australia, Australia

    1 publications · 88 citations

    1

    h-index

  5. SZ
    Shanfeng Zhu

    Fudan University, China

    1 publications · 89 citations

    1

    h-index

1–5 of 19

Institutions

10

  1. Shanghai Institute for Science of Science

    Xuhui, China

    3 h-index

    11 publications

    1.7K citations

  2. Fudan University

    Shanghai, China

    3 h-index

    11 publications

    1.7K citations

  3. Shanghai Center for Brain Science and Brain-Inspired Technology

    Shanghai, China

    3 h-index

    11 publications

    1.7K citations

  4. University of Southern California

    Los Angeles, United States

    1 h-index

    2 publications

    178 citations

  5. University of Hong Kong

    Pok Fu Lam, Hong Kong

    1 h-index

    5 publications

    270 citations

  6. Shanghai Innovative Research Center of Traditional Chinese Medicine

    Shanghai, China

    1 h-index

    1 publications

    188 citations

  7. Southeast University

    Nanjing, China

    1 h-index

    1 publications

    54 citations

  8. The University of Melbourne

    Melbourne, Australia

    1 h-index

    3 publications

    264 citations

1–8 of 10

Venues

  1. BMC Bioinformatics

    2 publications · 142 citations

    2

    h-index

  2. Bioinformatics

    2 publications · 277 citations

    2

    h-index

  3. Nature Communications

    1 publications · 187 citations

    1

    h-index

  4. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 1 publications · 10 citations

1–4