Shanfeng Zhu

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Naihui Zhou, Yuxiang Jiang, Timothy Bergquist et al. · Genome biology · 2019 · 459 citations · Full text

Critical Assessment of Metagenome Interpretation: the second round of challenges

Fernando Meyer, Adrian Fritz, Zhi-Luo Deng et al. · Nature Methods · 2022 · 366 citations · Full text

Collaborative matrix factorization with multiple similarities for predicting drug-target interactions

Xiaodong Zheng, Hao Ding, Hiroshi Mamitsuka et al. · 2013 · 330 citations

Drug Target, Engineering, Machine Learning +20

GOLabeler: improving sequence-based large-scale protein function prediction by learning to rank

Ronghui You, Zihan Zhang, Yi Xiong et al. · Bioinformatics · 2018 · 201 citations · Full text

NetGO: improving large-scale protein function prediction with massive network information

Ronghui You, Shuwei Yao, Yi Xiong et al. · Nucleic Acids Research · 2019 · 160 citations · Full text

Engineering, Machine Learning, Molecular Biology +23