Concepedia

Seed-and-extend Alignment

Seed-And-Extend Alignment is a read mapping method that identifies initial inexact matches (seeds) between a query sequence and a reference genome, followed by local alignment extension to confirm and refine potential alignments, distinguishing it from exhaustive alignment strategies by prioritizing speed through heuristic seeding.

35

Publications

5.5K

Citations

130

Authors

61

Institutions

Publications per year

2017–2026

13

Variants

Seed-and-extend

Parents

Publications

35

NOVOPlasty: <i>de novo</i> assembly of organelle genomes from whole genome data

Nicolas Dierckxsens, Patrick Mardulyn, Guillaume Smits · Nucleic Acids Research · 2016 · 2.9K citations · Full text

, , +17

Reducing storage requirements for biological sequence comparison

Michael Roberts, Wayne B. Hayes, Brian R. Hunt et al. · Bioinformatics · 2004 · 587 citations · Full text

, , +16

miR-192 Mediates TGF-β/Smad3-Driven Renal Fibrosis

Arthur C.K. Chung, Xiao Ru Huang, Xiao‐Ming Meng et al. · Journal of the American Society of Nephrology · 2010 · 360 citations · Full text

, , +10

Global network alignment using multiscale spectral signatures

Rob Patro, Carl Kingsford · Bioinformatics · 2012 · 214 citations · Full text

, , +15

RIblast: an ultrafast RNA–RNA interaction prediction system based on a seed-and-extension approach

Tsukasa Fukunaga, Michiaki Hamada · Bioinformatics · 2017 · 125 citations · Full text

, , +16

1–5 of 35

Authors

130

  1. CK
    Carl Kingsford

    Carnegie Mellon University, United States

    3 publications · 355 citations

    3

    h-index

  2. SK
    Sergey Koren

    National Human Genome Research Institute, United States

    2 publications · 136 citations

    2

    h-index

  3. JE
    John Emmons

    Stanford University, United States

    2 publications · 141 citations

    2

    h-index

  4. GP
    Gennady Pekhimenko

    Carnegie Mellon University, United States

    2 publications · 141 citations

    2

    h-index

  5. BS
    Bertil Schmidt

    Johannes Gutenberg University Mainz, Germany

    2 publications · 122 citations

    2

    h-index

1–5 of 130

Institutions

61

  1. Ghent University

    Ghent, Belgium

    3 h-index

    15 publications

    753 citations

  2. Bilkent University

    Ankara, Türkiye

    2 h-index

    8 publications

    729 citations

  3. HOGENT University of Applied Sciences and Arts

    Ghent, Belgium

    2 h-index

    4 publications

    182 citations

  4. Georgia Institute of Technology

    Atlanta, United States

    2 h-index

    4 publications

    272 citations

  5. Harbin Institute of Technology

    Harbin, China

    2 h-index

    7 publications

    507 citations

  6. Carnegie Mellon University

    Pittsburgh, United States

    2 h-index

    8 publications

    729 citations

  7. VIB-UGent Center for Plant Systems Biology

    Ghent, Belgium

    2 h-index

    3 publications

    196 citations

  8. Johannes Gutenberg University Mainz

    Mainz, Germany

    2 h-index

    4 publications

    244 citations

1–8 of 61

Venues

  1. Bioinformatics

    11 publications · 1.4K citations

    11

    h-index

  2. BMC Bioinformatics

    4 publications · 83 citations

    4

    h-index

  3. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 2 publications · 76 citations

    2

    h-index

  4. 2

    h-index

  5. Nucleic Acids Research

    2 publications · 2.9K citations

    2

    h-index

1–5