Concepedia

Seed Alignment

Seed Alignment is a genomic alignment technique that serves as an initial, high-confidence, locally matching subsequence used to anchor and guide the extension of broader sequence alignments within large-scale genome comparison.

37

Publications

4.1K

Citations

133

Authors

72

Institutions

Publications per year

2017–2026

10

Parents

Publications

37

The TIGRFAMs database of protein families

Daniel H. Haft · Nucleic Acids Research · 2003 · 1K citations

, , +13

TIGRFAMs and Genome Properties in 2013

Daniel H. Haft, Jeremy Selengut, R. Alexander Richter et al. · Nucleic Acids Research · 2012 · 620 citations · Full text

, , +17

YASS: enhancing the sensitivity of DNA similarity search

Laurent Noé, Grégory Kucherov · Nucleic Acids Research · 2005 · 388 citations · Full text

, , +15

TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes

Jeremy Selengut, Daniel H. Haft, Tonje Davidsen et al. · Nucleic Acids Research · 2006 · 303 citations · Full text

, , +17

Fr-TM-align: a new protein structural alignment method based on fragment alignments and the TM-score

Shashi Bhushan Pandit, Jeffrey Skolnick · BMC Bioinformatics · 2008 · 142 citations · Full text

, , +14

1–5 of 37

Authors

133

  1. DH
    Daniel H. Haft

    J. Craig Venter Institute, United States

    3 publications · 1.9K citations

    3

    h-index

  2. KS
    Kristoffer Sahlin

    Science for Life Laboratory, Sweden

    2 publications · 116 citations

    2

    h-index

  3. JG
    Jan Gorodkin

    University of Copenhagen, Denmark

    2 publications · 66 citations

    2

    h-index

  4. DL
    Dominique Lavenier

    Institut de Recherche en Informatique et Systèmes Aléatoires, France

    2 publications · 138 citations

    2

    h-index

  5. DR
    Dan Roth

    University of Illinois Urbana-Champaign, United States

    2 publications · 170 citations

    2

    h-index

1–5 of 133

Institutions

72

  1. Science for Life Laboratory

    Stockholm, Sweden

    2 h-index

    2 publications

    116 citations

  2. University of Copenhagen

    Copenhagen, Denmark

    2 h-index

    7 publications

    271 citations

  3. Stockholm University

    Stockholm, Sweden

    2 h-index

    2 publications

    116 citations

  4. Institut de Recherche en Informatique et Systèmes Aléatoires

    Rennes, France

    2 h-index

    5 publications

    310 citations

  5. University of Cambridge

    Cambridge, United Kingdom

    2 h-index

    5 publications

    402 citations

  6. National Institutes of Health

    Bethesda, United States

    2 h-index

    5 publications

    117 citations

  7. J. Craig Venter Institute

    La Jolla, United States

    1 h-index

    6 publications

    3.7K citations

  8. Leipzig University

    Leipzig, Germany

    1 h-index

    3 publications

    75 citations

1–8 of 72

Venues

  1. Bioinformatics

    6 publications · 417 citations

    6

    h-index

  2. Nucleic Acids Research

    5 publications · 2.4K citations

    5

    h-index

  3. BMC Bioinformatics

    3 publications · 183 citations

    3

    h-index

  4. Genome Research

    GR · 2 publications · 66 citations

    2

    h-index

  5. RNA Biology

    2 publications · 52 citations

    2

    h-index

1–5