Concepedia

Reference-free Variant Analysis

Reference-Free Variant Analysis is a computational approach in metagenomic variant analysis that identifies genetic variations without relying on a reference genome, distinguishing itself from reference-based methods by enabling variant discovery through direct comparison of sequencing reads to assembled contigs or de novo assembly graphs.

12

Publications

2.4K

Citations

92

Authors

42

Institutions

Publications per year

2017–2026

8

Parents

Publications

12

GenomeScope: fast reference-free genome profiling from short reads

Gregory W. Vurture, Fritz J. Sedlazeck, Maria Nattestad et al. · Bioinformatics · 2017 · 2K citations · Full text

, , +14

Reference-free detection of isolated SNPs

Raluca Uricaru, Guillaume Rizk, Vincent Lacroix et al. · Nucleic Acids Research · 2014 · 114 citations · Full text

, , +12

GenomeScope: Fast reference-free genome profiling from short reads

Gregory W. Vurture, Fritz J. Sedlazeck, Maria Nattestad et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2016 · 108 citations · Full text

, , +14

Genome Graphs

Adam M. Novak, Glenn Hickey, Erik Garrison et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2017 · 44 citations · Full text

, , +16

Reference-free SNP calling: improved accuracy by preventing incorrect calls from repetitive genomic regions

Jinzhuang Dou, Xiqiang Zhao, Xiaoteng Fu et al. · Biology Direct · 2012 · 38 citations · Full text

, , +14

1–5 of 12

Authors

92

  1. PP
    Pierre Peterlongo

    Institut de Recherche en Informatique et Systèmes Aléatoires, France

    2 publications · 135 citations

    2

    h-index

  2. MC
    Michael C. Schatz

    Johns Hopkins University, United States

    2 publications · 2.1K citations

    2

    h-index

  3. MN
    Maria Nattestad

    Johns Hopkins University, United States

    2 publications · 2.1K citations

    2

    h-index

  4. JG
    James Gurtowski

    Cold Spring Harbor Laboratory, United States

    2 publications · 2.1K citations

    2

    h-index

  5. FJ
    Fritz J. Sedlazeck

    Baylor College of Medicine, United States

    2 publications · 2.1K citations

    2

    h-index

1–5 of 92

Institutions

42

  1. Centre National de la Recherche Scientifique

    Paris, France

    3 h-index

    11 publications

    423 citations

  2. Cold Spring Harbor Laboratory

    Cold Spring Harbor, United States

    2 h-index

    12 publications

    12.4K citations

  3. Institut de Recherche en Informatique et Systèmes Aléatoires

    Rennes, France

    2 h-index

    5 publications

    384 citations

  4. Johns Hopkins University

    Baltimore, United States

    2 h-index

    4 publications

    4.1K citations

  5. Université Claude Bernard Lyon 1

    Villeurbanne, France

    2 h-index

    2 publications

    127 citations

  6. Stony Brook University

    Stony Brook, United States

    2 h-index

    2 publications

    2.1K citations

  7. Commissariat à l'Énergie Atomique et aux Énergies Alternatives

    Paris, France

    1 h-index

    5 publications

    105 citations

  8. Instituto Gulbenkian de Ciência

    Oeiras, Portugal

    1 h-index

    1 publications

    24 citations

1–8 of 42

Venues

  1. Molecular Ecology Resources

    3 publications · 65 citations

    3

    h-index

  2. Nucleic Acids Research

    2 publications · 139 citations

    2

    h-index

  3. Bioinformatics

    2 publications · 2K citations

    2

    h-index

  4. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 2 publications · 152 citations

    2

    h-index

  5. Cell

    1 publications · 20 citations

    1

    h-index

1–5