Concepedia

Reference-based Transcriptome Mapping

Reference-Based Transcriptome Mapping is a computational genomics approach that aligns RNA sequencing reads to a pre-existing reference genome or transcriptome to reconstruct and quantify gene expression profiles, distinguished by its reliance on a known genomic framework rather than de novo assembly.

64

Publications

5.5K

Citations

437

Authors

175

Institutions

Publications per year

2017–2026

25

Variants

Reference-guided Transcriptome Mapping

Parents

Publications

64

A gene-based association method for mapping traits using reference transcriptome data

Eric R. Gamazon, Kaanan P. Shah, Sahar V. Mozaffari et al. · Nature Genetics · 2015 · 2.1K citations · Full text

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Genome Evolution and Meiotic Maps by Massively Parallel DNA Sequencing: Spotted Gar, an Outgroup for the Teleost Genome Duplication

Angel Amores, Julian Catchen, Allyse Ferrara et al. · Genetics · 2011 · 385 citations · Full text

, , +17

RNA‐Seq: A Method for Comprehensive Transcriptome Analysis

Ugrappa Nagalakshmi, Karl Waern, M Snyder · Current Protocols in Molecular Biology · 2010 · 326 citations

, , +17

Practical low‐coverage genomewide sequencing of hundreds of individually barcoded samples for population and evolutionary genomics in nonmodel species

Nina Overgaard Therkildsen, Stephen R. Palumbi · Molecular Ecology Resources · 2016 · 183 citations

, , +15

The Genome and Linkage Map of the Northern Pike (Esox lucius): Conserved Synteny Revealed between the Salmonid Sister Group and the Neoteleostei

Éric Rondeau, David R. Minkley, Jong S. Leong et al. · PLoS ONE · 2014 · 155 citations · Full text

, , +17

1–5 of 64

Authors

437

  1. YP
    Yniv Palti

    National Center for Cool and Cold Water Aquaculture, United States

    2 publications · 137 citations

    2

    h-index

  2. AS
    Akanksha Srivastava

    Australian National University, Australia

    2 publications · 64 citations

    2

    h-index

  3. JA
    Joel A. Indi

    Universitat Pompeu Fabra, Spain

    2 publications · 64 citations

    2

    h-index

  4. GG
    Guangtu Gao

    National Center for Cool and Cold Water Aquaculture, United States

    2 publications · 137 citations

    2

    h-index

  5. SC
    Sílvia Carbonell Sala

    Centre for Genomic Regulation, Spain

    2 publications · 64 citations

    2

    h-index

1–5 of 437

Institutions

175

  1. Institut de Recherche pour le Développement

    Marseille, France

    3 h-index

    15 publications

    645 citations

  2. University of California, Davis

    Davis, United States

    3 h-index

    7 publications

    395 citations

  3. University of Lisbon

    Lisbon, Portugal

    3 h-index

    4 publications

    114 citations

  4. Centre National de la Recherche Scientifique

    Paris, France

    3 h-index

    16 publications

    588 citations

  5. National Institutes of Health

    Bethesda, United States

    2 h-index

    7 publications

    166 citations

  6. National Center for Cool and Cold Water Aquaculture

    Martinsburg, United States

    2 h-index

    10 publications

    658 citations

  7. The University of Osaka

    Osaka, Japan

    2 h-index

    18 publications

    1.1K citations

  8. Pacific University

    Forest Grove, United States

    2 h-index

    3 publications

    437 citations

1–8 of 175

Venues

  1. BMC Genomics

    13 publications · 618 citations

    13

    h-index

  2. PLoS ONE

    12 publications · 561 citations

    12

    h-index

  3. Molecular Ecology Resources

    2 publications · 208 citations

    2

    h-index

  4. BMC Plant Biology

    2 publications · 52 citations

    2

    h-index

  5. Bioinformatics

    2 publications · 169 citations

    2

    h-index

1–5