Concepedia

Pseudotime Pathway Analysis

Pseudotime Pathway Analysis is a computational method in single-cell genomics that infers dynamic pathway activity changes along a pseudotemporal trajectory of cellular states, distinguishing itself from static pathway analyses by modeling biological processes as continuous, temporally ordered transitions inferred from transcriptional variation across individual cells.

4

Publications

101

Citations

34

Authors

9

Institutions

Publications per year

2017–2026

4

Parents

Publications

4

Understanding of mouse and human bladder at single‐cell resolution: integrated analysis of trajectory and cell‐cell interactive networks based on multiple scRNA‐seq datasets

Bowen Shi, Yanyuan Wu, Haojie Chen et al. · Cell Proliferation · 2021 · 34 citations · Full text

, , +13

Multi-omics analysis reveals Mn exposure affects ferroptosis pathway in zebrafish brain

Shixuan Zhang, Luli Wu, Junrou Zhang et al. · Ecotoxicology and Environmental Safety · 2023 · 30 citations · Full text

, , +17

Single-cell transcriptomics uncover the key ferroptosis regulators contribute to cancer progression in head and neck squamous cell carcinoma

Fei Liu, Lindong Tang, Qing Li et al. · Frontiers in Molecular Biosciences · 2022 · 22 citations · Full text

, , +16

TIPS: trajectory inference of pathway significance through pseudotime comparison for functional assessment of single-cell RNAseq data

Zihan Zheng, X. Qiu, Haiyang Wu et al. · Briefings in Bioinformatics · 2021 · 15 citations · Full text

, , +17

NOTCH2 promotes osteoclast maturation and metabolism and modulates the transcriptome profile during osteoclastogenesis

Ernesto Canalis, Lauren Schilling, Jungeun Yu et al. · Journal of Biological Chemistry · 2023 · 13 citations · Full text

, , +16

1–5 of 4

Authors

34

  1. LC
    Ling Chang

    China Medical University, Taiwan

    1 publications · 15 citations

    1

    h-index

  2. XY
    Xin Yang

    Hangzhou Normal University, China

    1 publications · 30 citations

    1

    h-index

  3. YW
    Ying Wan

    Army Medical University, China

    1 publications · 15 citations

    1

    h-index

  4. YW
    Yanyuan Wu

    Charles R. Drew University of Medicine and Science, United States

    1 publications · 34 citations

    1

    h-index

  5. HW
    Haiyang Wu

    Quadram Institute, United Kingdom

    1 publications · 15 citations

    1

    h-index

1–5 of 34

Institutions

9

  1. Shanghai Jiao Tong University

    Shanghai, China

    1 h-index

    5 publications

    170 citations

  2. The Affiliated Yongchuan Hospital of Chongqing Medical University

    Chongqing, China

    1 h-index

    1 publications

    15 citations

  3. Jinan University

    Guangzhou, China

    1 h-index

    1 publications

    22 citations

  4. Chongqing Medical University

    Chongqing, China

    1 h-index

    1 publications

    15 citations

  5. Guangdong Provincial People's Hospital

    Guangzhou, China

    1 h-index

    7 publications

    154 citations

  6. XinHua Hospital

    Shanghai, China

    1 h-index

    5 publications

    170 citations

  7. Shenzhen University

    Shenzhen, China

    1 h-index

    1 publications

    15 citations

  8. Army Medical University

    Chongqing, China

    1 h-index

    7 publications

    105 citations

1–8 of 9

Venues

  1. Ecotoxicology and Environmental Safety

    EES · 1 publications · 30 citations

    1

    h-index

  2. Cell Proliferation

    1 publications · 34 citations

    1

    h-index

  3. Briefings in Bioinformatics

    1 publications · 15 citations

    1

    h-index

  4. Frontiers in Molecular Biosciences

    1 publications · 22 citations

    1

    h-index

  5. Journal of Biological Chemistry

    JBC · 1 publications · 13 citations

1–5