Concepedia

Protein Database Search

Protein Database Search is a computational method in proteomics informatics that identifies experimentally observed mass spectra by matching them against theoretical or predicted spectra derived from protein sequence databases, distinguished by its reliance on database indexing and scoring algorithms to establish peptide-spectrum matches.

4.5K

Publications

804.2K

Citations

15.7K

Authors

3.1K

Institutions

Publications per year

2017–2026

905

Parents

Children

Publications

4.5K

The Protein Data Bank

Helen M. Berman · Nucleic Acids Research · 2000 · 39.8K citations

, , +10

Search and clustering orders of magnitude faster than BLAST

R. C. Edgar · Bioinformatics · 2010 · 21.7K citations · Full text

, , +14

The Pfam Protein Families Database

Alex Bateman · Nucleic Acids Research · 2002 · 14.2K citations · Full text

, , +16

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

Weizhong Li, Adam Godzik · Bioinformatics · 2006 · 12.1K citations · Full text

, , +11

MEME SUITE: tools for motif discovery and searching

Timothy L. Bailey, Mikael Bodén, Fabian A. Buske et al. · Nucleic Acids Research · 2009 · 11.5K citations · Full text

, , +17

1–5 of 4.5K

Authors

15.7K

  1. GP
    Gajendra P. S. Raghava

    Institute of Microbial Technology, India

    44 publications · 7.4K citations

    35

    h-index

  2. AB
    Amos Bairoch

    University of Geneva, Switzerland

    39 publications · 15.3K citations

    35

    h-index

  3. JR
    John R. Yates

    Scripps Research Institute, United States

    36 publications · 10.6K citations

    29

    h-index

  4. AB
    Alex Bateman

    European Bioinformatics Institute, United Kingdom

    31 publications · 58K citations

    29

    h-index

  5. WS
    William Stafford Noble

    University of Washington, United States

    34 publications · 19K citations

    26

    h-index

1–5 of 15.7K

Institutions

3.1K

  1. European Bioinformatics Institute

    Cambridge, United Kingdom

    87 h-index

    776 publications

    824.4K citations

  2. SIB Swiss Institute of Bioinformatics

    Lausanne, Switzerland

    56 h-index

    459 publications

    302.1K citations

  3. Wellcome Trust

    London, United Kingdom

    55 h-index

    387 publications

    402.7K citations

  4. Centre National de la Recherche Scientifique

    Paris, France

    52 h-index

    486 publications

    167.9K citations

  5. University of Washington

    Seattle, United States

    50 h-index

    298 publications

    182.3K citations

  6. National Institutes of Health

    Bethesda, United States

    47 h-index

    346 publications

    182.2K citations

  7. University of California San Diego

    San Diego, United States

    44 h-index

    309 publications

    86.6K citations

  8. University of Michigan

    Ann Arbor, United States

    40 h-index

    201 publications

    45.5K citations

1–8 of 3.1K

Venues

  1. Nucleic Acids Research

    687 publications · 331.8K citations

    213

    h-index

  2. Bioinformatics

    373 publications · 84.1K citations

    93

    h-index

  3. Journal of Proteome Research

    JPR · 343 publications · 22.6K citations

    77

    h-index

  4. PROTEOMICS

    204 publications · 17.1K citations

    63

    h-index

  5. BMC Bioinformatics

    203 publications · 18.9K citations

    61

    h-index

1–5