Concepedia

Search Engine Scoring Functions

Search Engine Scoring Functions is a computational methodology used in protein database search that quantifies the likelihood of a query sequence matching a database sequence by assigning a numerical score based on sequence alignment features, substitution matrices, gap penalties, and statistical models to distinguish biologically significant alignments from random matches.

5

Publications

393

Citations

22

Authors

9

Institutions

Publications per year

2017–2026

1

Parents

Publications

5

General framework for developing and evaluating database scoring algorithms using the TANDEM search engine

Brendan MacLean, Jimmy K. Eng, Ronald C. Beavis et al. · Bioinformatics · 2006 · 218 citations · Full text

, , +16

IdentiPy: An Extensible Search Engine for Protein Identification in Shotgun Proteomics

Lev I. Levitsky, Mark V. Ivanov, Anna A. Lobas et al. · Journal of Proteome Research · 2018 · 69 citations

, , +17

<scp>D</scp>‐score: A search engine independent <scp>MD</scp>‐score

Marc Vaudel, Daniela Breiter, Florian Beck et al. · PROTEOMICS · 2013 · 49 citations · Full text

, , +17

A generalized hidden Markov model with discriminative training for query spelling correction

Yanen Li, Huizhong Duan, ChengXiang Zhai · 2012 · 31 citations

, , +12

When Target–Decoy False Discovery Rate Estimations Are Inaccurate and How to Spot Instances

Robert J. Chalkley · Journal of Proteome Research · 2013 · 26 citations · Full text

, , +16

1–5 of 5

Authors

22

  1. EM
    Elizaveta M. Solovyeva

    Moscow Institute of Physics and Technology, Russia

    1 publications · 69 citations

    1

    h-index

  2. FB
    Florian Beck

    Max Planck Institute of Biochemistry, Germany

    1 publications · 49 citations

    1

    h-index

  3. MV
    Marc Vaudel

    University of Bergen, Norway

    1 publications · 49 citations

    1

    h-index

  4. ML
    M. L. Pridatchenko

    Institute of Energy Problems of Chemical Physics, Russia

    1 publications · 69 citations

    1

    h-index

  5. HD
    Huizhong Duan

    University of Illinois Urbana-Champaign, United States

    1 publications · 31 citations

    1

    h-index

1–5 of 22

Institutions

9

  1. Leibniz Institute for Analytical Sciences - ISAS

    Dortmund, Germany

    1 h-index

    4 publications

    196 citations

  2. Fred Hutch Cancer Center

    Seattle, United States

    1 h-index

    3 publications

    654 citations

  3. University of Illinois Urbana-Champaign

    Urbana, United States

    1 h-index

    3 publications

    93 citations

  4. Institute of Energy Problems of Chemical Physics

    Moscow, Russia

    1 h-index

    8 publications

    552 citations

  5. Moscow Institute of Physics and Technology

    Dolgoprudnyy, Russia

    1 h-index

    1 publications

    69 citations

  6. University of California, San Francisco

    San Francisco, United States

    1 h-index

    1 publications

    26 citations

  7. Ghent University

    Ghent, Belgium

    1 h-index

    1 publications

    49 citations

  8. University of British Columbia

    Vancouver, Canada

    1 h-index

    1 publications

    218 citations

1–8 of 9

Venues

  1. Journal of Proteome Research

    JPR · 2 publications · 95 citations

    2

    h-index

  2. Bioinformatics

    1 publications · 218 citations

    1

    h-index

  3. PROTEOMICS

    1 publications · 49 citations

    1

    h-index

1–3