Concepedia

Protein Coarse-graining

Protein Coarse-Graining is a computational modeling method that reduces the atomic-level detail of protein structures into simplified, grouped representations to enable efficient simulation of large-scale biomolecular dynamics while retaining essential structural and functional properties.

474

Publications

25.6K

Citations

1.2K

Authors

483

Institutions

Publications per year

2017–2026

153

Variants

Protein Coarse-grained Modeling

Parents

Publications

474

On the Hamiltonian replica exchange method for efficient sampling of biomolecular systems: Application to protein structure prediction

Hiroaki Fukunishi, Osamu Watanabe, Shoji Takada · The Journal of Chemical Physics · 2002 · 827 citations

, , +14

Combining an Elastic Network With a Coarse-Grained Molecular Force Field: Structure, Dynamics, and Intermolecular Recognition

Xavier Périole, Marco Cavalli, ‪Siewert J. Marrink et al. · Journal of Chemical Theory and Computation · 2009 · 753 citations · Full text

, , +17

Fast procedure for reconstruction of full‐atom protein models from reduced representations

Piotr Rotkiewicz, Jeffrey Skolnick · Journal of Computational Chemistry · 2008 · 423 citations · Full text

, , +15

AWSEM-MD: Protein Structure Prediction Using Coarse-Grained Physical Potentials and Bioinformatically Based Local Structure Biasing

Aram Davtyan, Nicholas P. Schafer, Weihua Zheng et al. · The Journal of Physical Chemistry B · 2012 · 357 citations

, , +14

iMod: multipurpose normal mode analysis in internal coordinates

José Ramón López‐Blanco, José Ignacio Garzón, Pablo Chacón · Bioinformatics · 2011 · 326 citations · Full text

, , +17

1–5 of 474

Authors

1.2K

  1. GA
    Gregory A. Voth

    University of Chicago, United States

    15 publications · 1K citations

    15

    h-index

  2. RL
    Robert L. Jernigan

    Iowa State University, United States

    13 publications · 717 citations

    13

    h-index

  3. PD
    Philippe Derreumaux

    Centre National de la Recherche Scientifique, France

    13 publications · 830 citations

    13

    h-index

  4. AL
    Adam Liwo

    University of Gdańsk, Poland

    15 publications · 666 citations

    12

    h-index

  5. AK
    Adam K. Sieradzan

    University of Gdańsk, Poland

    11 publications · 470 citations

    11

    h-index

1–5 of 1.2K

Institutions

483

  1. Centre National de la Recherche Scientifique

    Paris, France

    27 h-index

    96 publications

    4.8K citations

  2. University of Chicago

    Chicago, United States

    17 h-index

    51 publications

    2.9K citations

  3. Rice University

    Houston, United States

    17 h-index

    59 publications

    4.8K citations

  4. Center for Theoretical Biological Physics

    Houston, United States

    15 h-index

    46 publications

    2.8K citations

  5. University of Gdańsk

    Gdansk, Poland

    15 h-index

    99 publications

    5.1K citations

  6. Sorbonne Université

    Paris, France

    14 h-index

    35 publications

    1.9K citations

  7. Université Paris Cité

    Paris, France

    13 h-index

    33 publications

    2.2K citations

  8. University of Warsaw

    Warsaw, Poland

    12 h-index

    36 publications

    1.9K citations

1–8 of 483

Venues

  1. Journal of Chemical Theory and Computation

    JCTC · 92 publications · 5.7K citations

    40

    h-index

  2. The Journal of Chemical Physics

    46 publications · 2.9K citations

    27

    h-index

  3. Biophysical Journal

    32 publications · 2.1K citations

    27

    h-index

  4. The Journal of Physical Chemistry B

    45 publications · 2.2K citations

    27

    h-index

  5. Proteins Structure Function and Bioinformatics

    32 publications · 1.8K citations

    22

    h-index

1–5